DVH24_035104 protein (Malus domestica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DVH24_035104

AP2/ERF domain-containing protein. (308 aa)

Predicted Functional Partners:

DVH24_037082

0.513

DVH24_009498

0.497

DVH24_030509

0.497

DVH24_029287

0.444

DVH24_021668

0.420

Your Current Organism:

Malus domestica

NCBI taxonomy Id: 3750
Other names: M. domestica, Malus communis, Malus communis Desf., Malus domestica Borkh., nom. cons. prop., Malus pumila auct., Malus pumila var. domestica, Malus pumila var. domestica (Borkh.) C.K.Schneid., Malus sylvestris var. domestica, Malus sylvestris var. domestica (Borkh.) Mansf., Malus x domestica, Pyrus malus, Pyrus malus L., apple, apple tree, cultivated apple

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVH24_009498	DVH24_021668	A0A498IU71	A0A498JXL8	F-box domain-containing protein.	Uncharacterized protein.	0.422
DVH24_009498	DVH24_030509	A0A498IU71	A0A498JVT9	F-box domain-containing protein.	F-box domain-containing protein.	0.900
DVH24_009498	DVH24_035104	A0A498IU71	A0A498IK82	F-box domain-containing protein.	AP2/ERF domain-containing protein.	0.497
DVH24_009498	DVH24_037082	A0A498IU71	A0A498HCV8	F-box domain-containing protein.	Uncharacterized protein.	0.520
DVH24_021668	DVH24_009498	A0A498JXL8	A0A498IU71	Uncharacterized protein.	F-box domain-containing protein.	0.422
DVH24_021668	DVH24_030509	A0A498JXL8	A0A498JVT9	Uncharacterized protein.	F-box domain-containing protein.	0.422
DVH24_021668	DVH24_035104	A0A498JXL8	A0A498IK82	Uncharacterized protein.	AP2/ERF domain-containing protein.	0.420
DVH24_021668	DVH24_037082	A0A498JXL8	A0A498HCV8	Uncharacterized protein.	Uncharacterized protein.	0.540
DVH24_029287	DVH24_035104	A0A498HT06	A0A498IK82	DNA_MISMATCH_REPAIR_2 domain-containing protein.	AP2/ERF domain-containing protein.	0.444
DVH24_030509	DVH24_009498	A0A498JVT9	A0A498IU71	F-box domain-containing protein.	F-box domain-containing protein.	0.900
DVH24_030509	DVH24_021668	A0A498JVT9	A0A498JXL8	F-box domain-containing protein.	Uncharacterized protein.	0.422
DVH24_030509	DVH24_035104	A0A498JVT9	A0A498IK82	F-box domain-containing protein.	AP2/ERF domain-containing protein.	0.497
DVH24_030509	DVH24_037082	A0A498JVT9	A0A498HCV8	F-box domain-containing protein.	Uncharacterized protein.	0.520
DVH24_035104	DVH24_009498	A0A498IK82	A0A498IU71	AP2/ERF domain-containing protein.	F-box domain-containing protein.	0.497
DVH24_035104	DVH24_021668	A0A498IK82	A0A498JXL8	AP2/ERF domain-containing protein.	Uncharacterized protein.	0.420
DVH24_035104	DVH24_029287	A0A498IK82	A0A498HT06	AP2/ERF domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.444
DVH24_035104	DVH24_030509	A0A498IK82	A0A498JVT9	AP2/ERF domain-containing protein.	F-box domain-containing protein.	0.497
DVH24_035104	DVH24_037082	A0A498IK82	A0A498HCV8	AP2/ERF domain-containing protein.	Uncharacterized protein.	0.513
DVH24_037082	DVH24_009498	A0A498HCV8	A0A498IU71	Uncharacterized protein.	F-box domain-containing protein.	0.520
DVH24_037082	DVH24_021668	A0A498HCV8	A0A498JXL8	Uncharacterized protein.	Uncharacterized protein.	0.540

page 1 of 2

Server load: low (28%) [HD]

Permalink

Network

Cooccurrence

Databases

Neighborhood

Textmining

Fusion

Experiments

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About