LOC103723955 protein (Phoenix dactylifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103723955

Heat stress transcription factor A-5-like. (469 aa)

Predicted Functional Partners:

LOC103709667

0.517

LOC103715510

0.514

LOC103701937

0.464

LOC103703640

0.458

LOC103696098

0.433

LOC103706102

0.432

LOC103723446

0.432

LOC103701676

0.431

LOC103707122

0.431

LOC103698345

0.407

Your Current Organism:

Phoenix dactylifera

NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103696098	LOC103715510	A0A2H3WZ18	A0A2H3YP85	Nuclear poly(A) polymerase 1.	Cytochrome c-type biogenesis protein.	0.520
LOC103696098	LOC103723955	A0A2H3WZ18	A0A2H3ZGR3	Nuclear poly(A) polymerase 1.	Heat stress transcription factor A-5-like.	0.433
LOC103698345	LOC103723955	A0A2H3X5C0	A0A2H3ZGR3	Ras-related protein RABC1.	Heat stress transcription factor A-5-like.	0.407
LOC103701676	LOC103701937	A0A2H3XDE4	A0A2H3XE91	Heat shock factor-binding protein.	Heat shock 70 kDa protein 17.	0.444
LOC103701676	LOC103723955	A0A2H3XDE4	A0A2H3ZGR3	Heat shock factor-binding protein.	Heat stress transcription factor A-5-like.	0.431
LOC103701937	LOC103701676	A0A2H3XE91	A0A2H3XDE4	Heat shock 70 kDa protein 17.	Heat shock factor-binding protein.	0.444
LOC103701937	LOC103707122	A0A2H3XE91	A0A2H3XWS9	Heat shock 70 kDa protein 17.	Heat shock factor-binding protein-like isoform X1.	0.444
LOC103701937	LOC103723955	A0A2H3XE91	A0A2H3ZGR3	Heat shock 70 kDa protein 17.	Heat stress transcription factor A-5-like.	0.464
LOC103703640	LOC103723955	A0A2H3XJL9	A0A2H3ZGR3	Target of rapamycin complex subunit LST8.	Heat stress transcription factor A-5-like.	0.458
LOC103706102	LOC103723955	A0A2H3XSY6	A0A2H3ZGR3	Ras-related protein RABC2a-like.	Heat stress transcription factor A-5-like.	0.432
LOC103707122	LOC103701937	A0A2H3XWS9	A0A2H3XE91	Heat shock factor-binding protein-like isoform X1.	Heat shock 70 kDa protein 17.	0.444
LOC103707122	LOC103723955	A0A2H3XWS9	A0A2H3ZGR3	Heat shock factor-binding protein-like isoform X1.	Heat stress transcription factor A-5-like.	0.431
LOC103709667	LOC103715510	A0A2H3Y4M1	A0A2H3YP85	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Cytochrome c-type biogenesis protein.	0.571
LOC103709667	LOC103723955	A0A2H3Y4M1	A0A2H3ZGR3	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Heat stress transcription factor A-5-like.	0.517
LOC103715510	LOC103696098	A0A2H3YP85	A0A2H3WZ18	Cytochrome c-type biogenesis protein.	Nuclear poly(A) polymerase 1.	0.520
LOC103715510	LOC103709667	A0A2H3YP85	A0A2H3Y4M1	Cytochrome c-type biogenesis protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.571
LOC103715510	LOC103723955	A0A2H3YP85	A0A2H3ZGR3	Cytochrome c-type biogenesis protein.	Heat stress transcription factor A-5-like.	0.514
LOC103723446	LOC103723955	A0A2H3ZF58	A0A2H3ZGR3	Ras-related protein RABC2a-like.	Heat stress transcription factor A-5-like.	0.432
LOC103723955	LOC103696098	A0A2H3ZGR3	A0A2H3WZ18	Heat stress transcription factor A-5-like.	Nuclear poly(A) polymerase 1.	0.433
LOC103723955	LOC103698345	A0A2H3ZGR3	A0A2H3X5C0	Heat stress transcription factor A-5-like.	Ras-related protein RABC1.	0.407