STRINGSTRING
LOC104212357 LOC104212357 LOC104217737 LOC104217737 LOC104221183 LOC104221183 LOC104248966 LOC104248966 LOC104229232 LOC104229232 LOC104231894 LOC104231894 LOC104247975 LOC104247975 LOC104218491 LOC104218491 LOC104226731 LOC104226731 LOC104226778 LOC104226778 LOC104214666 LOC104214666
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104212357TGACG-sequence-specific DNA-binding protein TGA-2.1. (456 aa)    
Predicted Functional Partners:
LOC104217737
DEAD-box ATP-dependent RNA helicase 36; Belongs to the DEAD box helicase family.
   
 0.875
LOC104221183
pre-mRNA-splicing factor SLU7-like.
    
 0.871
LOC104248966
pre-mRNA-splicing factor syf2.
    
 0.871
LOC104229232
U3 small nucleolar RNA-associated protein 25.
   
 0.870
LOC104231894
Uncharacterized protein LOC104231894.
   
 0.870
LOC104247975
Regulatory protein NPR1.
    
 0.856
LOC104218491
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.854
LOC104226731
Probable U3 small nucleolar RNA-associated protein 7.
   
 0.835
LOC104226778
Nucleolar protein 6 isoform X1.
   
 0.832
LOC104214666
Uncharacterized protein C57A7.06-like.
   
 0.823
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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