STRINGSTRING
LOC104216793 LOC104216793 LOC104218832 LOC104218832 LOC104246038 LOC104246038 LOC104216742 LOC104216742 LOC104228474 LOC104228474 LOC104213073 LOC104213073 LOC104244587 LOC104244587 LOC104229462 LOC104229462 LOC104224074 LOC104224074 LOC104233208 LOC104233208 LOC104237457 LOC104237457
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104216793Zinc finger CCCH domain-containing protein 1-like isoform X1. (263 aa)    
Predicted Functional Partners:
LOC104218832
Peptidyl-prolyl cis-trans isomerase CYP57 isoform X1.
    
 0.980
LOC104246038
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1.
    
 0.976
LOC104216742
LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC22 homolog.
    
 0.956
LOC104228474
LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC22 homolog.
    
 0.956
LOC104213073
BUD13 homolog.
    
 
 0.940
LOC104244587
Cell division cycle 5-like protein.
    
 
 0.937
LOC104229462
Splicing factor 3B subunit 2.
    
 
 0.935
LOC104224074
Splicing factor 3B subunit 1.
    
 
 0.933
LOC104233208
WD repeat-containing protein 25.
    
 0.931
LOC104237457
pre-mRNA-processing factor 17 isoform X1.
    
 0.931
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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