STRINGSTRING
LOC104219668 LOC104219668 LOC104229120 LOC104229120 LOC104221029 LOC104221029 LOC104228822 LOC104228822 LOC104242455 LOC104242455 LOC104226614 LOC104226614 LOC104249558 LOC104249558 LOC104243611 LOC104243611 LOC104249723 LOC104249723
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104219668Zinc finger CCCH domain-containing protein 39. (331 aa)    
Predicted Functional Partners:
LOC104229120
Exosome complex component RRP43.
    
  0.608
LOC104221029
mRNA-decapping enzyme subunit 2.
   
 0.541
LOC104228822
D-aminoacyl-tRNA deacylase-like isoform X1.
    
 0.536
LOC104242455
D-aminoacyl-tRNA deacylase-like.
    
 0.536
LOC104226614
CCR4-NOT transcription complex subunit 1 isoform X1.
    
 
 0.427
LOC104249558
Exosome complex component CSL4.
     
 0.427
LOC104243611
Exosome complex component RRP4.
    
 0.426
LOC104249723
Exosome complex exonuclease RRP46 homolog.
    
  0.424
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
Server load: low (20%) [HD]