LOC104224837 protein (Nicotiana sylvestris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104224837

LOW QUALITY PROTEIN: uncharacterized protein LOC104224837. (880 aa)

Predicted Functional Partners:

LOC104219495

0.993

LOC104236733

0.993

LOC104236875

0.976

LOC104210401

0.933

LOC104223092

0.916

LOC104210037

0.914

LOC104226802

0.914

LOC104215682

0.908

LOC104226049

0.908

LOC104232186

0.908

Your Current Organism:

Nicotiana sylvestris

NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104210037	LOC104210401	A0A1U7V5Y3	A0A1U7V777	Uncharacterized protein LOC104210037.	RNA polymerase II subunit A C-terminal domain phosphatase SSU72.	0.947
LOC104210037	LOC104215682	A0A1U7V5Y3	A0A1U7VNA2	Uncharacterized protein LOC104210037.	Uncharacterized RNA-binding protein C644.16 isoform X1.	0.959
LOC104210037	LOC104219495	A0A1U7V5Y3	A0A1U7VQ09	Uncharacterized protein LOC104210037.	Cleavage and polyadenylation specificity factor CPSF30-like isoform X1.	0.975
LOC104210037	LOC104223092	A0A1U7V5Y3	A0A1U7W2A8	Uncharacterized protein LOC104210037.	Cleavage stimulation factor subunit 3 isoform X1.	0.983
LOC104210037	LOC104224837	A0A1U7V5Y3	A0A1U7W891	Uncharacterized protein LOC104210037.	LOW QUALITY PROTEIN: uncharacterized protein LOC104224837.	0.914
LOC104210037	LOC104226049	A0A1U7V5Y3	A0A1U7WNI4	Uncharacterized protein LOC104210037.	Flowering time control protein FY-like.	0.965
LOC104210037	LOC104226802	A0A1U7V5Y3	A0A1U7WSG5	Uncharacterized protein LOC104210037.	Symplekin.	0.906
LOC104210037	LOC104232186	A0A1U7V5Y3	A0A1U7WYD9	Uncharacterized protein LOC104210037.	Flowering time control protein FY isoform X1.	0.965
LOC104210037	LOC104236733	A0A1U7V5Y3	A0A1U7XQ11	Uncharacterized protein LOC104210037.	Cleavage and polyadenylation specificity factor CPSF30-like.	0.975
LOC104210037	LOC104236875	A0A1U7V5Y3	A0A1U7XHS7	Uncharacterized protein LOC104210037.	Cleavage and polyadenylation specificity factor subunit 2.	0.986
LOC104210401	LOC104210037	A0A1U7V777	A0A1U7V5Y3	RNA polymerase II subunit A C-terminal domain phosphatase SSU72.	Uncharacterized protein LOC104210037.	0.947
LOC104210401	LOC104215682	A0A1U7V777	A0A1U7VNA2	RNA polymerase II subunit A C-terminal domain phosphatase SSU72.	Uncharacterized RNA-binding protein C644.16 isoform X1.	0.928
LOC104210401	LOC104219495	A0A1U7V777	A0A1U7VQ09	RNA polymerase II subunit A C-terminal domain phosphatase SSU72.	Cleavage and polyadenylation specificity factor CPSF30-like isoform X1.	0.989
LOC104210401	LOC104223092	A0A1U7V777	A0A1U7W2A8	RNA polymerase II subunit A C-terminal domain phosphatase SSU72.	Cleavage stimulation factor subunit 3 isoform X1.	0.671
LOC104210401	LOC104224837	A0A1U7V777	A0A1U7W891	RNA polymerase II subunit A C-terminal domain phosphatase SSU72.	LOW QUALITY PROTEIN: uncharacterized protein LOC104224837.	0.933
LOC104210401	LOC104226049	A0A1U7V777	A0A1U7WNI4	RNA polymerase II subunit A C-terminal domain phosphatase SSU72.	Flowering time control protein FY-like.	0.960
LOC104210401	LOC104226802	A0A1U7V777	A0A1U7WSG5	RNA polymerase II subunit A C-terminal domain phosphatase SSU72.	Symplekin.	0.947
LOC104210401	LOC104232186	A0A1U7V777	A0A1U7WYD9	RNA polymerase II subunit A C-terminal domain phosphatase SSU72.	Flowering time control protein FY isoform X1.	0.991
LOC104210401	LOC104236733	A0A1U7V777	A0A1U7XQ11	RNA polymerase II subunit A C-terminal domain phosphatase SSU72.	Cleavage and polyadenylation specificity factor CPSF30-like.	0.989
LOC104210401	LOC104236875	A0A1U7V777	A0A1U7XHS7	RNA polymerase II subunit A C-terminal domain phosphatase SSU72.	Cleavage and polyadenylation specificity factor subunit 2.	0.994