STRINGSTRING
LOC104226616 LOC104226616 LOC104249363 LOC104249363 cry1 cry1 LOC104212195 LOC104212195 LOC104229198 LOC104229198 LOC104217240 LOC104217240 LOC104220187 LOC104220187 LOC104229504 LOC104229504 LOC104238439 LOC104238439 LOC104246811 LOC104246811 LOC104230975 LOC104230975
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104226616GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily. (264 aa)    
Predicted Functional Partners:
LOC104249363
Cyclin; Belongs to the cyclin family.
      
 0.907
cry1
Cryptochrome-1-like isoform X1.
   
  
 0.574
LOC104212195
Multiprotein-bridging factor 1c.
      
 0.572
LOC104229198
Signal peptide peptidase-like 2.
      
 0.557
LOC104217240
Callose synthase 9-like.
      
 0.499
LOC104220187
Callose synthase 9 isoform X1.
      
 0.499
LOC104229504
Light-mediated development protein DET1 isoform X1.
      
 0.497
LOC104238439
Callose synthase 10.
      
 0.497
LOC104246811
Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
      
 0.497
LOC104230975
Cyclin; Belongs to the cyclin family.
      
 0.472
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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