LOC104231007 protein (Nicotiana sylvestris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104231007

NAC domain-containing protein 21/22-like. (340 aa)

Predicted Functional Partners:

LOC104244425

0.493

LOC104212326

0.462

LOC104234245

0.459

LOC104226486

0.457

LOC104240689

0.453

LOC104230028

0.451

LOC104240210

0.451

LOC104249080

0.449

LOC104232534

0.446

LOC104240124

0.445

Your Current Organism:

Nicotiana sylvestris

NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104212326	LOC104226486	A0A1U7V0B7	A0A1U7WDR7	Protein TIFY 10A.	Transcription factor MYC2-like.	0.612
LOC104212326	LOC104230028	A0A1U7V0B7	A0A1U7X2G0	Protein TIFY 10A.	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	0.485
LOC104212326	LOC104231007	A0A1U7V0B7	A0A1U7X5S2	Protein TIFY 10A.	NAC domain-containing protein 21/22-like.	0.462
LOC104226486	LOC104212326	A0A1U7WDR7	A0A1U7V0B7	Transcription factor MYC2-like.	Protein TIFY 10A.	0.612
LOC104226486	LOC104231007	A0A1U7WDR7	A0A1U7X5S2	Transcription factor MYC2-like.	NAC domain-containing protein 21/22-like.	0.457
LOC104226486	LOC104240210	A0A1U7WDR7	A0A1U7XML9	Transcription factor MYC2-like.	Protein TIFY 10A-like.	0.497
LOC104226486	LOC104244425	A0A1U7WDR7	A0A1U7YFX8	Transcription factor MYC2-like.	Protein TIFY 10B-like isoform X1.	0.575
LOC104230028	LOC104212326	A0A1U7X2G0	A0A1U7V0B7	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	Protein TIFY 10A.	0.485
LOC104230028	LOC104231007	A0A1U7X2G0	A0A1U7X5S2	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	NAC domain-containing protein 21/22-like.	0.451
LOC104230028	LOC104240210	A0A1U7X2G0	A0A1U7XML9	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	Protein TIFY 10A-like.	0.493
LOC104231007	LOC104212326	A0A1U7X5S2	A0A1U7V0B7	NAC domain-containing protein 21/22-like.	Protein TIFY 10A.	0.462
LOC104231007	LOC104226486	A0A1U7X5S2	A0A1U7WDR7	NAC domain-containing protein 21/22-like.	Transcription factor MYC2-like.	0.457
LOC104231007	LOC104230028	A0A1U7X5S2	A0A1U7X2G0	NAC domain-containing protein 21/22-like.	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	0.451
LOC104231007	LOC104232534	A0A1U7X5S2	A0A1U7XC81	NAC domain-containing protein 21/22-like.	Flowering-promoting factor 1-like protein 3.	0.446
LOC104231007	LOC104234245	A0A1U7X5S2	A0A1U7XHY8	NAC domain-containing protein 21/22-like.	Subtilisin-like protease.	0.459
LOC104231007	LOC104240124	A0A1U7X5S2	A0A1U7XQP2	NAC domain-containing protein 21/22-like.	Probable WRKY transcription factor 70.	0.445
LOC104231007	LOC104240210	A0A1U7X5S2	A0A1U7XML9	NAC domain-containing protein 21/22-like.	Protein TIFY 10A-like.	0.451
LOC104231007	LOC104240689	A0A1U7X5S2	A0A1U7XP94	NAC domain-containing protein 21/22-like.	Transcription factor CYCLOIDEA.	0.453
LOC104231007	LOC104244425	A0A1U7X5S2	A0A1U7YFX8	NAC domain-containing protein 21/22-like.	Protein TIFY 10B-like isoform X1.	0.493
LOC104231007	LOC104249080	A0A1U7X5S2	A0A1U7YYF6	NAC domain-containing protein 21/22-like.	Transcription factor CYCLOIDEA-like.	0.449