LOC104232344 protein (Nicotiana sylvestris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104232344

Transcription factor HEC3-like. (268 aa)

Predicted Functional Partners:

LOC104215702

0.483

LOC104246566

0.472

LOC104232600

0.470

LOC104248088

0.469

LOC104224204

0.459

LOC104246533

0.448

LOC104227857

0.444

LOC104211659

0.438

LOC104236192

0.438

LOC104239223

0.438

Your Current Organism:

Nicotiana sylvestris

NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104211659	LOC104232344	A0A1U7UY13	A0A1U7X2C5	Uncharacterized protein LOC104211659 isoform X1.	Transcription factor HEC3-like.	0.438
LOC104211659	LOC104236192	A0A1U7UY13	A0A1U7XN50	Uncharacterized protein LOC104211659 isoform X1.	Lysine-specific demethylase JMJ25 isoform X1.	0.440
LOC104215702	LOC104224204	A0A1U7VNC0	A0A1U7W665	Uncharacterized protein LOC104215702.	GDSL esterase/lipase At1g28640-like.	0.430
LOC104215702	LOC104232344	A0A1U7VNC0	A0A1U7X2C5	Uncharacterized protein LOC104215702.	Transcription factor HEC3-like.	0.483
LOC104215702	LOC104239223	A0A1U7VNC0	A0A1U7XR50	Uncharacterized protein LOC104215702.	Tetraspanin-8-like.	0.491
LOC104215702	LOC104246533	A0A1U7VNC0	A0A1U7YP77	Uncharacterized protein LOC104215702.	Putative F-box/LRR-repeat protein At5g41840.	0.542
LOC104215702	LOC104246566	A0A1U7VNC0	A0A1U7YFE3	Uncharacterized protein LOC104215702.	Growth-regulating factor 9 isoform X1.	0.525
LOC104215702	LOC104248088	A0A1U7VNC0	A0A1U7YTP2	Uncharacterized protein LOC104215702.	GDSL esterase/lipase At5g45910-like.	0.407
LOC104224204	LOC104215702	A0A1U7W665	A0A1U7VNC0	GDSL esterase/lipase At1g28640-like.	Uncharacterized protein LOC104215702.	0.430
LOC104224204	LOC104232344	A0A1U7W665	A0A1U7X2C5	GDSL esterase/lipase At1g28640-like.	Transcription factor HEC3-like.	0.459
LOC104224204	LOC104239223	A0A1U7W665	A0A1U7XR50	GDSL esterase/lipase At1g28640-like.	Tetraspanin-8-like.	0.444
LOC104224204	LOC104246533	A0A1U7W665	A0A1U7YP77	GDSL esterase/lipase At1g28640-like.	Putative F-box/LRR-repeat protein At5g41840.	0.513
LOC104224204	LOC104246566	A0A1U7W665	A0A1U7YFE3	GDSL esterase/lipase At1g28640-like.	Growth-regulating factor 9 isoform X1.	0.436
LOC104227857	LOC104232344	A0A1U7WMK7	A0A1U7X2C5	Uncharacterized protein LOC104227857.	Transcription factor HEC3-like.	0.444
LOC104227857	LOC104246566	A0A1U7WMK7	A0A1U7YFE3	Uncharacterized protein LOC104227857.	Growth-regulating factor 9 isoform X1.	0.409
LOC104232344	LOC104211659	A0A1U7X2C5	A0A1U7UY13	Transcription factor HEC3-like.	Uncharacterized protein LOC104211659 isoform X1.	0.438
LOC104232344	LOC104215702	A0A1U7X2C5	A0A1U7VNC0	Transcription factor HEC3-like.	Uncharacterized protein LOC104215702.	0.483
LOC104232344	LOC104224204	A0A1U7X2C5	A0A1U7W665	Transcription factor HEC3-like.	GDSL esterase/lipase At1g28640-like.	0.459
LOC104232344	LOC104227857	A0A1U7X2C5	A0A1U7WMK7	Transcription factor HEC3-like.	Uncharacterized protein LOC104227857.	0.444
LOC104232344	LOC104232600	A0A1U7X2C5	A0A1U7X015	Transcription factor HEC3-like.	Uncharacterized protein LOC104232600.	0.470