LOC104245746 protein (Nicotiana sylvestris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104245746

Uncharacterized protein LOC104245746 isoform X1. (418 aa)

Predicted Functional Partners:

LOC104218359

0.819

LOC104233087

0.819

LOC104244317

0.791

LOC104235226

0.506

LOC104223411

0.499

LOC104226531

0.496

LOC104226103

0.495

LOC104213541

0.492

LOC104238615

0.486

LOC104246859

0.485

Your Current Organism:

Nicotiana sylvestris

NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104213541	LOC104223411	A0A1U7V4P1	A0A1U7VZF3	Uncharacterized protein LOC104213541.	Uncharacterized protein LOC104223411.	0.442
LOC104213541	LOC104226531	A0A1U7V4P1	A0A1U7WA26	Uncharacterized protein LOC104213541.	Uncharacterized protein LOC104226531.	0.476
LOC104213541	LOC104235226	A0A1U7V4P1	A0A1U7XJX3	Uncharacterized protein LOC104213541.	Uncharacterized protein LOC104235226.	0.462
LOC104213541	LOC104238615	A0A1U7V4P1	A0A1U7XXS4	Uncharacterized protein LOC104213541.	Uncharacterized protein LOC104238615.	0.486
LOC104213541	LOC104245746	A0A1U7V4P1	A0A1U7YCM2	Uncharacterized protein LOC104213541.	Uncharacterized protein LOC104245746 isoform X1.	0.492
LOC104213541	LOC104246859	A0A1U7V4P1	A0A1U7YGI4	Uncharacterized protein LOC104213541.	Uncharacterized protein LOC104246859.	0.441
LOC104218359	LOC104244317	A0A1U7VGD3	A0A1U7YFL2	Protein YIPF.	Golgi apparatus membrane protein TVP23; Golgi membrane protein involved in vesicular trafficking. Belongs to the TVP23 family.	0.842
LOC104218359	LOC104245746	A0A1U7VGD3	A0A1U7YCM2	Protein YIPF.	Uncharacterized protein LOC104245746 isoform X1.	0.819
LOC104223411	LOC104213541	A0A1U7VZF3	A0A1U7V4P1	Uncharacterized protein LOC104223411.	Uncharacterized protein LOC104213541.	0.442
LOC104223411	LOC104226103	A0A1U7VZF3	A0A1U7WNP7	Uncharacterized protein LOC104223411.	Glutamate receptor 2.6-like.	0.460
LOC104223411	LOC104226531	A0A1U7VZF3	A0A1U7WA26	Uncharacterized protein LOC104223411.	Uncharacterized protein LOC104226531.	0.482
LOC104223411	LOC104235226	A0A1U7VZF3	A0A1U7XJX3	Uncharacterized protein LOC104223411.	Uncharacterized protein LOC104235226.	0.530
LOC104223411	LOC104238615	A0A1U7VZF3	A0A1U7XXS4	Uncharacterized protein LOC104223411.	Uncharacterized protein LOC104238615.	0.512
LOC104223411	LOC104245746	A0A1U7VZF3	A0A1U7YCM2	Uncharacterized protein LOC104223411.	Uncharacterized protein LOC104245746 isoform X1.	0.499
LOC104223411	LOC104246859	A0A1U7VZF3	A0A1U7YGI4	Uncharacterized protein LOC104223411.	Uncharacterized protein LOC104246859.	0.523
LOC104226103	LOC104223411	A0A1U7WNP7	A0A1U7VZF3	Glutamate receptor 2.6-like.	Uncharacterized protein LOC104223411.	0.460
LOC104226103	LOC104226531	A0A1U7WNP7	A0A1U7WA26	Glutamate receptor 2.6-like.	Uncharacterized protein LOC104226531.	0.450
LOC104226103	LOC104235226	A0A1U7WNP7	A0A1U7XJX3	Glutamate receptor 2.6-like.	Uncharacterized protein LOC104235226.	0.401
LOC104226103	LOC104245746	A0A1U7WNP7	A0A1U7YCM2	Glutamate receptor 2.6-like.	Uncharacterized protein LOC104245746 isoform X1.	0.495
LOC104226531	LOC104213541	A0A1U7WA26	A0A1U7V4P1	Uncharacterized protein LOC104226531.	Uncharacterized protein LOC104213541.	0.476