LOC104246319 protein (Nicotiana sylvestris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104246319

BES1/BZR1 homolog protein 4-like isoform X1. (326 aa)

Predicted Functional Partners:

LOC104221735

0.446

LOC104244225

0.441

LOC104221292

0.435

LOC104216646

0.427

LOC104220977

0.424

LOC104249252

0.419

LOC104221877

0.418

LOC104241487

0.408

LOC104241485

0.408

LOC104239059

0.407

Your Current Organism:

Nicotiana sylvestris

NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104216646	LOC104220977	A0A1U7VFB9	A0A1U7W7L7	Uncharacterized protein LOC104216646 isoform X1.	Cold-regulated 413 plasma membrane protein 2-like.	0.409
LOC104216646	LOC104221877	A0A1U7VFB9	A0A1U7W9J1	Uncharacterized protein LOC104216646 isoform X1.	Zinc finger protein ZAT10-like.	0.492
LOC104216646	LOC104246319	A0A1U7VFB9	A0A1U7YBC0	Uncharacterized protein LOC104216646 isoform X1.	BES1/BZR1 homolog protein 4-like isoform X1.	0.427
LOC104220977	LOC104216646	A0A1U7W7L7	A0A1U7VFB9	Cold-regulated 413 plasma membrane protein 2-like.	Uncharacterized protein LOC104216646 isoform X1.	0.409
LOC104220977	LOC104221292	A0A1U7W7L7	A0A1U7W7J4	Cold-regulated 413 plasma membrane protein 2-like.	Blue copper protein-like.	0.464
LOC104220977	LOC104221735	A0A1U7W7L7	A0A1U7VTE1	Cold-regulated 413 plasma membrane protein 2-like.	Zinc finger protein ZAT11-like.	0.419
LOC104220977	LOC104246319	A0A1U7W7L7	A0A1U7YBC0	Cold-regulated 413 plasma membrane protein 2-like.	BES1/BZR1 homolog protein 4-like isoform X1.	0.424
LOC104221292	LOC104220977	A0A1U7W7J4	A0A1U7W7L7	Blue copper protein-like.	Cold-regulated 413 plasma membrane protein 2-like.	0.464
LOC104221292	LOC104221735	A0A1U7W7J4	A0A1U7VTE1	Blue copper protein-like.	Zinc finger protein ZAT11-like.	0.467
LOC104221292	LOC104246319	A0A1U7W7J4	A0A1U7YBC0	Blue copper protein-like.	BES1/BZR1 homolog protein 4-like isoform X1.	0.435
LOC104221735	LOC104220977	A0A1U7VTE1	A0A1U7W7L7	Zinc finger protein ZAT11-like.	Cold-regulated 413 plasma membrane protein 2-like.	0.419
LOC104221735	LOC104221292	A0A1U7VTE1	A0A1U7W7J4	Zinc finger protein ZAT11-like.	Blue copper protein-like.	0.467
LOC104221735	LOC104246319	A0A1U7VTE1	A0A1U7YBC0	Zinc finger protein ZAT11-like.	BES1/BZR1 homolog protein 4-like isoform X1.	0.446
LOC104221877	LOC104216646	A0A1U7W9J1	A0A1U7VFB9	Zinc finger protein ZAT10-like.	Uncharacterized protein LOC104216646 isoform X1.	0.492
LOC104221877	LOC104241485	A0A1U7W9J1	A0A1U7XYL9	Zinc finger protein ZAT10-like.	Polygalacturonase-1 non-catalytic subunit beta-like.	0.441
LOC104221877	LOC104241487	A0A1U7W9J1	A0A1U7XRM3	Zinc finger protein ZAT10-like.	Polygalacturonase-1 non-catalytic subunit beta-like.	0.437
LOC104221877	LOC104246319	A0A1U7W9J1	A0A1U7YBC0	Zinc finger protein ZAT10-like.	BES1/BZR1 homolog protein 4-like isoform X1.	0.418
LOC104239059	LOC104241485	A0A1U7XRE8	A0A1U7XYL9	Fasciclin-like arabinogalactan protein 2.	Polygalacturonase-1 non-catalytic subunit beta-like.	0.501
LOC104239059	LOC104241487	A0A1U7XRE8	A0A1U7XRM3	Fasciclin-like arabinogalactan protein 2.	Polygalacturonase-1 non-catalytic subunit beta-like.	0.495
LOC104239059	LOC104246319	A0A1U7XRE8	A0A1U7YBC0	Fasciclin-like arabinogalactan protein 2.	BES1/BZR1 homolog protein 4-like isoform X1.	0.407