LOC104246865 protein (Nicotiana sylvestris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104246865

NAC domain-containing protein 90-like. (272 aa)

Predicted Functional Partners:

LOC104234312

0.535

LOC104239113

0.535

LOC104229507

0.530

LOC104213574

0.528

LOC104214104

0.526

LOC104220916

0.526

LOC104250104

0.523

LOC104247150

0.520

LOC104243513

0.510

LOC104249905

0.510

Your Current Organism:

Nicotiana sylvestris

NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104213574	LOC104214104	A0A1U7UZH2	A0A1U7VJL1	Uncharacterized protein LOC104213574.	NAC domain-containing protein 78-like.	0.479
LOC104213574	LOC104220916	A0A1U7UZH2	A0A1U7VQK4	Uncharacterized protein LOC104213574.	Protein TIFY 10B-like.	0.486
LOC104213574	LOC104229507	A0A1U7UZH2	A0A1U7WPG5	Uncharacterized protein LOC104213574.	Uncharacterized protein LOC104229507.	0.504
LOC104213574	LOC104234312	A0A1U7UZH2	A0A1U7X5M5	Uncharacterized protein LOC104213574.	Early nodulin-like protein 3.	0.516
LOC104213574	LOC104239113	A0A1U7UZH2	A0A1U7XIR0	Uncharacterized protein LOC104213574.	Uncharacterized protein LOC104239113.	0.525
LOC104213574	LOC104243513	A0A1U7UZH2	A0A1U7YDZ1	Uncharacterized protein LOC104213574.	Uncharacterized protein LOC104243513.	0.460
LOC104213574	LOC104246865	A0A1U7UZH2	A0A1U7YAE3	Uncharacterized protein LOC104213574.	NAC domain-containing protein 90-like.	0.528
LOC104213574	LOC104247150	A0A1U7UZH2	A0A1U7YRF5	Uncharacterized protein LOC104213574.	Transcription repressor OFP4-like.	0.484
LOC104213574	LOC104249905	A0A1U7UZH2	A0A1U7YS04	Uncharacterized protein LOC104213574.	Uncharacterized protein LOC104249905.	0.508
LOC104213574	LOC104250104	A0A1U7UZH2	A0A1U7Z0P6	Uncharacterized protein LOC104213574.	F-box protein At1g30200-like.	0.486
LOC104214104	LOC104213574	A0A1U7VJL1	A0A1U7UZH2	NAC domain-containing protein 78-like.	Uncharacterized protein LOC104213574.	0.479
LOC104214104	LOC104220916	A0A1U7VJL1	A0A1U7VQK4	NAC domain-containing protein 78-like.	Protein TIFY 10B-like.	0.520
LOC104214104	LOC104229507	A0A1U7VJL1	A0A1U7WPG5	NAC domain-containing protein 78-like.	Uncharacterized protein LOC104229507.	0.533
LOC104214104	LOC104234312	A0A1U7VJL1	A0A1U7X5M5	NAC domain-containing protein 78-like.	Early nodulin-like protein 3.	0.527
LOC104214104	LOC104239113	A0A1U7VJL1	A0A1U7XIR0	NAC domain-containing protein 78-like.	Uncharacterized protein LOC104239113.	0.514
LOC104214104	LOC104243513	A0A1U7VJL1	A0A1U7YDZ1	NAC domain-containing protein 78-like.	Uncharacterized protein LOC104243513.	0.408
LOC104214104	LOC104246865	A0A1U7VJL1	A0A1U7YAE3	NAC domain-containing protein 78-like.	NAC domain-containing protein 90-like.	0.526
LOC104214104	LOC104247150	A0A1U7VJL1	A0A1U7YRF5	NAC domain-containing protein 78-like.	Transcription repressor OFP4-like.	0.515
LOC104214104	LOC104249905	A0A1U7VJL1	A0A1U7YS04	NAC domain-containing protein 78-like.	Uncharacterized protein LOC104249905.	0.439
LOC104214104	LOC104250104	A0A1U7VJL1	A0A1U7Z0P6	NAC domain-containing protein 78-like.	F-box protein At1g30200-like.	0.477