STRINGSTRING
LOC104248078 LOC104248078 cry1 cry1 LOC104212195 LOC104212195 LOC104246811 LOC104246811 LOC104229504 LOC104229504 LOC104229198 LOC104229198 LOC104238439 LOC104238439 LOC104216797 LOC104216797 LOC104221827 LOC104221827 LOC104223848 LOC104223848 LOC104236817 LOC104236817
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
LOC104248078GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily. (326 aa)    
Predicted Functional Partners:
cry1
Cryptochrome-1-like isoform X1.
   
  
 0.766
LOC104212195
Multiprotein-bridging factor 1c.
      
 0.654
LOC104246811
Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
      
 0.651
LOC104229504
Light-mediated development protein DET1 isoform X1.
      
 0.583
LOC104229198
Signal peptide peptidase-like 2.
      
 0.559
LOC104238439
Callose synthase 10.
      
 0.526
LOC104216797
Cryptochrome-1.
   
  
 0.518
LOC104221827
Putative callose synthase 8.
      
 0.499
LOC104223848
Putative callose synthase 8 isoform X1.
      
 0.499
LOC104236817
Callose synthase 7-like.
      
 0.499
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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