STRINGSTRING
LOC104248648 LOC104248648 LOC104247642 LOC104247642 LOC104215021 LOC104215021 LOC104226493 LOC104226493 LOC104212571 LOC104212571 LOC104237348 LOC104237348 LOC104243004 LOC104243004 LOC104229644 LOC104229644 LOC104232586 LOC104232586 LOC104240261 LOC104240261 LOC104240025 LOC104240025
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurrence
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[Homology]
Score
LOC104248648Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (645 aa)    
Predicted Functional Partners:
LOC104247642
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
 
 
 0.645
LOC104215021
Uncharacterized protein LOC104215021.
      
 0.555
LOC104226493
Uncharacterized protein LOC104226493.
      
 0.555
LOC104212571
Protein OBERON 2-like.
  
     0.515
LOC104237348
OBERON-like protein; Probable transcription factor.
  
     0.513
LOC104243004
Protein LATERAL ROOT PRIMORDIUM 1.
  
     0.511
LOC104229644
Methyltransferase.
  
     0.507
LOC104232586
Protein SHI RELATED SEQUENCE 5-like isoform X1.
  
     0.507
LOC104240261
Methyltransferase.
  
     0.505
LOC104240025
Methyltransferase.
  
     0.503
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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