LOC104248679 protein (Nicotiana sylvestris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104248679

Transcription factor bHLH94-like. (333 aa)

Predicted Functional Partners:

LOC104232739

0.514

LOC104240842

0.508

LOC104232699

0.495

LOC104238816

0.494

LOC104224687

0.493

LOC104239123

0.492

LOC104212007

0.488

LOC104224467

0.488

LOC104214261

0.483

LOC104219975

0.483

Your Current Organism:

Nicotiana sylvestris

NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104212007	LOC104214261	A0A1U7VCC6	A0A1U7V745	NAC domain-containing protein 2-like.	Blue copper protein-like.	0.501
LOC104212007	LOC104224687	A0A1U7VCC6	A0A1U7WBR0	NAC domain-containing protein 2-like.	Uncharacterized protein LOC104224687.	0.497
LOC104212007	LOC104232739	A0A1U7VCC6	A0A1U7X3N6	NAC domain-containing protein 2-like.	Uncharacterized protein LOC104232739.	0.480
LOC104212007	LOC104238816	A0A1U7VCC6	A0A1U7XX91	NAC domain-containing protein 2-like.	Transcriptional regulator TAC1-like.	0.416
LOC104212007	LOC104248679	A0A1U7VCC6	A0A1U7YJI7	NAC domain-containing protein 2-like.	Transcription factor bHLH94-like.	0.488
LOC104214261	LOC104212007	A0A1U7V745	A0A1U7VCC6	Blue copper protein-like.	NAC domain-containing protein 2-like.	0.501
LOC104214261	LOC104219975	A0A1U7V745	A0A1U7VVQ9	Blue copper protein-like.	Protein FEZ-like.	0.485
LOC104214261	LOC104224687	A0A1U7V745	A0A1U7WBR0	Blue copper protein-like.	Uncharacterized protein LOC104224687.	0.405
LOC104214261	LOC104232699	A0A1U7V745	A0A1U7X3J4	Blue copper protein-like.	NAC domain-containing protein 43-like.	0.414
LOC104214261	LOC104240842	A0A1U7V745	A0A1U7XWP5	Blue copper protein-like.	NAC domain-containing protein 76 isoform X1.	0.447
LOC104214261	LOC104248679	A0A1U7V745	A0A1U7YJI7	Blue copper protein-like.	Transcription factor bHLH94-like.	0.483
LOC104219975	LOC104214261	A0A1U7VVQ9	A0A1U7V745	Protein FEZ-like.	Blue copper protein-like.	0.485
LOC104219975	LOC104224687	A0A1U7VVQ9	A0A1U7WBR0	Protein FEZ-like.	Uncharacterized protein LOC104224687.	0.431
LOC104219975	LOC104232739	A0A1U7VVQ9	A0A1U7X3N6	Protein FEZ-like.	Uncharacterized protein LOC104232739.	0.470
LOC104219975	LOC104248679	A0A1U7VVQ9	A0A1U7YJI7	Protein FEZ-like.	Transcription factor bHLH94-like.	0.483
LOC104224467	LOC104224687	A0A1U7W745	A0A1U7WBR0	NAC domain-containing protein 43-like.	Uncharacterized protein LOC104224687.	0.490
LOC104224467	LOC104232739	A0A1U7W745	A0A1U7X3N6	NAC domain-containing protein 43-like.	Uncharacterized protein LOC104232739.	0.411
LOC104224467	LOC104248679	A0A1U7W745	A0A1U7YJI7	NAC domain-containing protein 43-like.	Transcription factor bHLH94-like.	0.488
LOC104224687	LOC104212007	A0A1U7WBR0	A0A1U7VCC6	Uncharacterized protein LOC104224687.	NAC domain-containing protein 2-like.	0.497
LOC104224687	LOC104214261	A0A1U7WBR0	A0A1U7V745	Uncharacterized protein LOC104224687.	Blue copper protein-like.	0.405