EUGRSUZ_H04738 protein (Eucalyptus grandis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EUGRSUZ_H04738

BHLH domain-containing protein. (300 aa)

Predicted Functional Partners:

EUGRSUZ_I02323

0.510

EUGRSUZ_L02364

0.493

EUGRSUZ_J02474

0.489

EUGRSUZ_C00771

0.473

EUGRSUZ_I00187

0.466

EUGRSUZ_F01373

0.466

EUGRSUZ_C03784

0.465

EUGRSUZ_E01053

0.463

EUGRSUZ_C03202

0.462

EUGRSUZ_C03200

0.460

Your Current Organism:

Eucalyptus grandis

NCBI taxonomy Id: 71139
Other names: E. grandis, Eucalyptus grandis W.Hill ex Maiden, rose gum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EUGRSUZ_C00771	EUGRSUZ_F01373	A0A059CLU8	A0A059BP07	Uncharacterized protein.	Uncharacterized protein.	0.509
EUGRSUZ_C00771	EUGRSUZ_H04738	A0A059CLU8	A0A059B7G5	Uncharacterized protein.	BHLH domain-containing protein.	0.473
EUGRSUZ_C00771	EUGRSUZ_I00187	A0A059CLU8	A0A059ALB1	Uncharacterized protein.	PMR5N domain-containing protein.	0.501
EUGRSUZ_C00771	EUGRSUZ_I02323	A0A059CLU8	A0A059ARK4	Uncharacterized protein.	Uncharacterized protein.	0.539
EUGRSUZ_C00771	EUGRSUZ_J02474	A0A059CLU8	A0A059AHQ1	Uncharacterized protein.	Uncharacterized protein.	0.499
EUGRSUZ_C00771	EUGRSUZ_L02364	A0A059CLU8	A0A058ZT22	Uncharacterized protein.	Uncharacterized protein.	0.448
EUGRSUZ_C03200	EUGRSUZ_F01373	A0A059CUF7	A0A059BP07	Uncharacterized protein.	Uncharacterized protein.	0.518
EUGRSUZ_C03200	EUGRSUZ_H04738	A0A059CUF7	A0A059B7G5	Uncharacterized protein.	BHLH domain-containing protein.	0.460
EUGRSUZ_C03200	EUGRSUZ_I00187	A0A059CUF7	A0A059ALB1	Uncharacterized protein.	PMR5N domain-containing protein.	0.466
EUGRSUZ_C03200	EUGRSUZ_I02323	A0A059CUF7	A0A059ARK4	Uncharacterized protein.	Uncharacterized protein.	0.535
EUGRSUZ_C03200	EUGRSUZ_J02474	A0A059CUF7	A0A059AHQ1	Uncharacterized protein.	Uncharacterized protein.	0.497
EUGRSUZ_C03200	EUGRSUZ_L02364	A0A059CUF7	A0A058ZT22	Uncharacterized protein.	Uncharacterized protein.	0.453
EUGRSUZ_C03202	EUGRSUZ_F01373	A0A059CUJ7	A0A059BP07	Uncharacterized protein.	Uncharacterized protein.	0.511
EUGRSUZ_C03202	EUGRSUZ_H04738	A0A059CUJ7	A0A059B7G5	Uncharacterized protein.	BHLH domain-containing protein.	0.462
EUGRSUZ_C03202	EUGRSUZ_I00187	A0A059CUJ7	A0A059ALB1	Uncharacterized protein.	PMR5N domain-containing protein.	0.465
EUGRSUZ_C03202	EUGRSUZ_I02323	A0A059CUJ7	A0A059ARK4	Uncharacterized protein.	Uncharacterized protein.	0.534
EUGRSUZ_C03202	EUGRSUZ_J02474	A0A059CUJ7	A0A059AHQ1	Uncharacterized protein.	Uncharacterized protein.	0.495
EUGRSUZ_C03202	EUGRSUZ_L02364	A0A059CUJ7	A0A058ZT22	Uncharacterized protein.	Uncharacterized protein.	0.453
EUGRSUZ_C03784	EUGRSUZ_H04738	A0A059CVH6	A0A059B7G5	Uncharacterized protein.	BHLH domain-containing protein.	0.465
EUGRSUZ_C03784	EUGRSUZ_I00187	A0A059CVH6	A0A059ALB1	Uncharacterized protein.	PMR5N domain-containing protein.	0.420