EUGRSUZ_I00059 protein (Eucalyptus grandis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EUGRSUZ_I00059

NAC domain-containing protein. (293 aa)

Predicted Functional Partners:

A0A059DH82

0.537

EUGRSUZ_K03314

0.533

EUGRSUZ_E00279

0.528

EUGRSUZ_A02808

0.528

EUGRSUZ_F03985

0.527

EUGRSUZ_D02201

0.527

EUGRSUZ_F04286

0.524

EUGRSUZ_F04285

0.523

EUGRSUZ_E00212

0.523

EUGRSUZ_E00210

0.523

Your Current Organism:

Eucalyptus grandis

NCBI taxonomy Id: 71139
Other names: E. grandis, Eucalyptus grandis W.Hill ex Maiden, rose gum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A059DH82	EUGRSUZ_A02808	A0A059DH82	A0A059DIW1	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Methyltransferase.	0.533
A0A059DH82	EUGRSUZ_D02201	A0A059DH82	A0A059CHW6	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Uncharacterized protein.	0.506
A0A059DH82	EUGRSUZ_E00210	A0A059DH82	A0A059C0E7	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Methyltransferase.	0.526
A0A059DH82	EUGRSUZ_E00212	A0A059DH82	A0A059BZP2	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Methyltransferase.	0.535
A0A059DH82	EUGRSUZ_E00279	A0A059DH82	A0A059C0N5	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Uncharacterized protein.	0.492
A0A059DH82	EUGRSUZ_F03985	A0A059DH82	A0A059BYW2	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Uncharacterized protein.	0.505
A0A059DH82	EUGRSUZ_F04285	A0A059DH82	A0A059BYY0	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Uncharacterized protein.	0.557
A0A059DH82	EUGRSUZ_F04286	A0A059DH82	A0A059BZ05	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Uncharacterized protein.	0.534
A0A059DH82	EUGRSUZ_I00059	A0A059DH82	A0A059AJ90	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	NAC domain-containing protein.	0.537
A0A059DH82	EUGRSUZ_K03314	A0A059DH82	A0A059A7X4	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	0.580
EUGRSUZ_A02808	A0A059DH82	A0A059DIW1	A0A059DH82	Methyltransferase.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.533
EUGRSUZ_A02808	EUGRSUZ_F03985	A0A059DIW1	A0A059BYW2	Methyltransferase.	Uncharacterized protein.	0.403
EUGRSUZ_A02808	EUGRSUZ_I00059	A0A059DIW1	A0A059AJ90	Methyltransferase.	NAC domain-containing protein.	0.528
EUGRSUZ_A02808	EUGRSUZ_K03314	A0A059DIW1	A0A059A7X4	Methyltransferase.	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	0.522
EUGRSUZ_D02201	A0A059DH82	A0A059CHW6	A0A059DH82	Uncharacterized protein.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.506
EUGRSUZ_D02201	EUGRSUZ_E00210	A0A059CHW6	A0A059C0E7	Uncharacterized protein.	Methyltransferase.	0.429
EUGRSUZ_D02201	EUGRSUZ_F03985	A0A059CHW6	A0A059BYW2	Uncharacterized protein.	Uncharacterized protein.	0.533
EUGRSUZ_D02201	EUGRSUZ_I00059	A0A059CHW6	A0A059AJ90	Uncharacterized protein.	NAC domain-containing protein.	0.527
EUGRSUZ_D02201	EUGRSUZ_K03314	A0A059CHW6	A0A059A7X4	Uncharacterized protein.	Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	0.512
EUGRSUZ_E00210	A0A059DH82	A0A059C0E7	A0A059DH82	Methyltransferase.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.526