EUGRSUZ_B00515 protein (Eucalyptus grandis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EUGRSUZ_B00515

Dof-type domain-containing protein. (462 aa)

Predicted Functional Partners:

EUGRSUZ_I00892

0.497

EUGRSUZ_F00192

0.483

EUGRSUZ_F02974

0.477

EUGRSUZ_B03605

0.471

EUGRSUZ_H03150

0.468

EUGRSUZ_F02440

0.466

EUGRSUZ_H01057

0.441

EUGRSUZ_H01085

0.438

EUGRSUZ_K02642

0.435

EUGRSUZ_J02113

0.433

Your Current Organism:

Eucalyptus grandis

NCBI taxonomy Id: 71139
Other names: E. grandis, Eucalyptus grandis W.Hill ex Maiden, rose gum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EUGRSUZ_B00515	EUGRSUZ_B03605	A0A059D075	A0A059D8K7	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.471
EUGRSUZ_B00515	EUGRSUZ_F00192	A0A059D075	A0A059BJU1	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.483
EUGRSUZ_B00515	EUGRSUZ_F02440	A0A059D075	A0A059BT63	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.466
EUGRSUZ_B00515	EUGRSUZ_F02974	A0A059D075	A0A059BTG3	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.477
EUGRSUZ_B00515	EUGRSUZ_H01057	A0A059D075	A0A059AWX8	Dof-type domain-containing protein.	Lipase_3 domain-containing protein.	0.441
EUGRSUZ_B00515	EUGRSUZ_H01085	A0A059D075	A0A059AXD1	Dof-type domain-containing protein.	AP2/ERF domain-containing protein.	0.438
EUGRSUZ_B00515	EUGRSUZ_H03150	A0A059D075	A0A059B362	Dof-type domain-containing protein.	MATH domain-containing protein.	0.468
EUGRSUZ_B00515	EUGRSUZ_I00892	A0A059D075	A0A059AMM8	Dof-type domain-containing protein.	Uncharacterized protein.	0.497
EUGRSUZ_B00515	EUGRSUZ_J02113	A0A059D075	A0A059AHA6	Dof-type domain-containing protein.	Uncharacterized protein.	0.433
EUGRSUZ_B00515	EUGRSUZ_K02642	A0A059D075	A0A059A5M8	Dof-type domain-containing protein.	Rhodanese domain-containing protein.	0.435
EUGRSUZ_B03605	EUGRSUZ_B00515	A0A059D8K7	A0A059D075	AP2/ERF domain-containing protein.	Dof-type domain-containing protein.	0.471
EUGRSUZ_F00192	EUGRSUZ_B00515	A0A059BJU1	A0A059D075	AP2/ERF domain-containing protein.	Dof-type domain-containing protein.	0.483
EUGRSUZ_F00192	EUGRSUZ_I00892	A0A059BJU1	A0A059AMM8	AP2/ERF domain-containing protein.	Uncharacterized protein.	0.445
EUGRSUZ_F00192	EUGRSUZ_J02113	A0A059BJU1	A0A059AHA6	AP2/ERF domain-containing protein.	Uncharacterized protein.	0.438
EUGRSUZ_F00192	EUGRSUZ_K02642	A0A059BJU1	A0A059A5M8	AP2/ERF domain-containing protein.	Rhodanese domain-containing protein.	0.652
EUGRSUZ_F02440	EUGRSUZ_B00515	A0A059BT63	A0A059D075	AP2/ERF domain-containing protein.	Dof-type domain-containing protein.	0.466
EUGRSUZ_F02440	EUGRSUZ_K02642	A0A059BT63	A0A059A5M8	AP2/ERF domain-containing protein.	Rhodanese domain-containing protein.	0.420
EUGRSUZ_F02974	EUGRSUZ_B00515	A0A059BTG3	A0A059D075	AP2/ERF domain-containing protein.	Dof-type domain-containing protein.	0.477
EUGRSUZ_H01057	EUGRSUZ_B00515	A0A059AWX8	A0A059D075	Lipase_3 domain-containing protein.	Dof-type domain-containing protein.	0.441
EUGRSUZ_H01057	EUGRSUZ_K02642	A0A059AWX8	A0A059A5M8	Lipase_3 domain-containing protein.	Rhodanese domain-containing protein.	0.444