EUGRSUZ_I01908 protein (Eucalyptus grandis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EUGRSUZ_I01908

LOB domain-containing protein. (253 aa)

Predicted Functional Partners:

EUGRSUZ_H04814

0.489

EUGRSUZ_K03465

0.440

EUGRSUZ_E00951

0.438

EUGRSUZ_K00655

0.421

EUGRSUZ_L01368

0.418

EUGRSUZ_F01575

0.414

EUGRSUZ_C01735

0.413

EUGRSUZ_L01932

0.412

EUGRSUZ_L01414

0.410

EUGRSUZ_H02837

0.410

Your Current Organism:

Eucalyptus grandis

NCBI taxonomy Id: 71139
Other names: E. grandis, Eucalyptus grandis W.Hill ex Maiden, rose gum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EUGRSUZ_C01735	EUGRSUZ_H02837	A0A059CPJ6	A0A059B1V0	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.400
EUGRSUZ_C01735	EUGRSUZ_H04814	A0A059CPJ6	A0A059B7P6	Uncharacterized protein.	FLZ-type domain-containing protein.	0.451
EUGRSUZ_C01735	EUGRSUZ_I01908	A0A059CPJ6	A0A059AQV5	Uncharacterized protein.	LOB domain-containing protein.	0.413
EUGRSUZ_E00951	EUGRSUZ_F01575	A0A059C3J9	A0A059BP84	Uncharacterized protein.	ZF-HD dimerization-type domain-containing protein.	0.463
EUGRSUZ_E00951	EUGRSUZ_H04814	A0A059C3J9	A0A059B7P6	Uncharacterized protein.	FLZ-type domain-containing protein.	0.517
EUGRSUZ_E00951	EUGRSUZ_I01908	A0A059C3J9	A0A059AQV5	Uncharacterized protein.	LOB domain-containing protein.	0.438
EUGRSUZ_E00951	EUGRSUZ_K00655	A0A059C3J9	A0A059A0K3	Uncharacterized protein.	Uncharacterized protein.	0.456
EUGRSUZ_E00951	EUGRSUZ_K03465	A0A059C3J9	A0A059A8N8	Uncharacterized protein.	Uncharacterized protein.	0.453
EUGRSUZ_F01575	EUGRSUZ_E00951	A0A059BP84	A0A059C3J9	ZF-HD dimerization-type domain-containing protein.	Uncharacterized protein.	0.463
EUGRSUZ_F01575	EUGRSUZ_H04814	A0A059BP84	A0A059B7P6	ZF-HD dimerization-type domain-containing protein.	FLZ-type domain-containing protein.	0.453
EUGRSUZ_F01575	EUGRSUZ_I01908	A0A059BP84	A0A059AQV5	ZF-HD dimerization-type domain-containing protein.	LOB domain-containing protein.	0.414
EUGRSUZ_H02837	EUGRSUZ_C01735	A0A059B1V0	A0A059CPJ6	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.400
EUGRSUZ_H02837	EUGRSUZ_H04814	A0A059B1V0	A0A059B7P6	TPR_REGION domain-containing protein.	FLZ-type domain-containing protein.	0.441
EUGRSUZ_H02837	EUGRSUZ_I01908	A0A059B1V0	A0A059AQV5	TPR_REGION domain-containing protein.	LOB domain-containing protein.	0.410
EUGRSUZ_H02837	EUGRSUZ_L01368	A0A059B1V0	A0A058ZUC1	TPR_REGION domain-containing protein.	Pkinase_Tyr domain-containing protein.	0.493
EUGRSUZ_H04814	EUGRSUZ_C01735	A0A059B7P6	A0A059CPJ6	FLZ-type domain-containing protein.	Uncharacterized protein.	0.451
EUGRSUZ_H04814	EUGRSUZ_E00951	A0A059B7P6	A0A059C3J9	FLZ-type domain-containing protein.	Uncharacterized protein.	0.517
EUGRSUZ_H04814	EUGRSUZ_F01575	A0A059B7P6	A0A059BP84	FLZ-type domain-containing protein.	ZF-HD dimerization-type domain-containing protein.	0.453
EUGRSUZ_H04814	EUGRSUZ_H02837	A0A059B7P6	A0A059B1V0	FLZ-type domain-containing protein.	TPR_REGION domain-containing protein.	0.441
EUGRSUZ_H04814	EUGRSUZ_I01908	A0A059B7P6	A0A059AQV5	FLZ-type domain-containing protein.	LOB domain-containing protein.	0.489