EUGRSUZ_F00039 protein (Eucalyptus grandis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EUGRSUZ_F00039

Dof-type domain-containing protein. (255 aa)

Predicted Functional Partners:

EUGRSUZ_J01636

0.528

EUGRSUZ_F02974

0.515

EUGRSUZ_A00705

0.509

A0A059CU30

0.507

A0A059CUB7

0.507

EUGRSUZ_F01607

0.503

EUGRSUZ_F02975

0.503

EUGRSUZ_E00857

0.502

EUGRSUZ_D01731

0.498

A0A059DJ82

0.498

Your Current Organism:

Eucalyptus grandis

NCBI taxonomy Id: 71139
Other names: E. grandis, Eucalyptus grandis W.Hill ex Maiden, rose gum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A059CU30	A0A059DJ82	A0A059CU30	A0A059DJ82	Uncharacterized protein.	SynN domain-containing protein.	0.515
A0A059CU30	EUGRSUZ_A00705	A0A059CU30	A0A059DCK9	Uncharacterized protein.	Uncharacterized protein.	0.544
A0A059CU30	EUGRSUZ_D01731	A0A059CU30	A0A059CG70	Uncharacterized protein.	AP2/ERF domain-containing protein.	0.444
A0A059CU30	EUGRSUZ_F00039	A0A059CU30	A0A059BKI4	Uncharacterized protein.	Dof-type domain-containing protein.	0.507
A0A059CU30	EUGRSUZ_F01607	A0A059CU30	A0A059BNW3	Uncharacterized protein.	AP2/ERF domain-containing protein.	0.472
A0A059CU30	EUGRSUZ_F02974	A0A059CU30	A0A059BTG3	Uncharacterized protein.	AP2/ERF domain-containing protein.	0.496
A0A059CU30	EUGRSUZ_F02975	A0A059CU30	A0A059BU89	Uncharacterized protein.	AP2/ERF domain-containing protein.	0.487
A0A059CU30	EUGRSUZ_J01636	A0A059CU30	A0A059AED2	Uncharacterized protein.	Uncharacterized protein.	0.559
A0A059CUB7	A0A059DJ82	A0A059CUB7	A0A059DJ82	Uncharacterized protein.	SynN domain-containing protein.	0.501
A0A059CUB7	EUGRSUZ_A00705	A0A059CUB7	A0A059DCK9	Uncharacterized protein.	Uncharacterized protein.	0.539
A0A059CUB7	EUGRSUZ_D01731	A0A059CUB7	A0A059CG70	Uncharacterized protein.	AP2/ERF domain-containing protein.	0.418
A0A059CUB7	EUGRSUZ_F00039	A0A059CUB7	A0A059BKI4	Uncharacterized protein.	Dof-type domain-containing protein.	0.507
A0A059CUB7	EUGRSUZ_F01607	A0A059CUB7	A0A059BNW3	Uncharacterized protein.	AP2/ERF domain-containing protein.	0.453
A0A059CUB7	EUGRSUZ_F02974	A0A059CUB7	A0A059BTG3	Uncharacterized protein.	AP2/ERF domain-containing protein.	0.484
A0A059CUB7	EUGRSUZ_F02975	A0A059CUB7	A0A059BU89	Uncharacterized protein.	AP2/ERF domain-containing protein.	0.484
A0A059CUB7	EUGRSUZ_J01636	A0A059CUB7	A0A059AED2	Uncharacterized protein.	Uncharacterized protein.	0.558
A0A059DJ82	A0A059CU30	A0A059DJ82	A0A059CU30	SynN domain-containing protein.	Uncharacterized protein.	0.515
A0A059DJ82	A0A059CUB7	A0A059DJ82	A0A059CUB7	SynN domain-containing protein.	Uncharacterized protein.	0.501
A0A059DJ82	EUGRSUZ_A00705	A0A059DJ82	A0A059DCK9	SynN domain-containing protein.	Uncharacterized protein.	0.520
A0A059DJ82	EUGRSUZ_D01731	A0A059DJ82	A0A059CG70	SynN domain-containing protein.	AP2/ERF domain-containing protein.	0.470