EUGRSUZ_G03029 protein (Eucalyptus grandis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EUGRSUZ_G03029

Uncharacterized protein. (287 aa)

Predicted Functional Partners:

EUGRSUZ_B02379

0.568

EUGRSUZ_I00922

0.564

EUGRSUZ_I00923

0.564

EUGRSUZ_B02268

0.564

EUGRSUZ_F03677

0.495

EUGRSUZ_A02444

0.481

EUGRSUZ_A01245

0.454

EUGRSUZ_C00679

0.425

A0A059CP16

0.425

A0A059CP56

0.425

Your Current Organism:

Eucalyptus grandis

NCBI taxonomy Id: 71139
Other names: E. grandis, Eucalyptus grandis W.Hill ex Maiden, rose gum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A059CP16	A0A059CP56	A0A059CP16	A0A059CP56	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A059CP16	EUGRSUZ_C00679	A0A059CP16	A0A059CLY3	Uncharacterized protein.	Uncharacterized protein.	0.740
A0A059CP16	EUGRSUZ_G03029	A0A059CP16	A0A059BHW7	Uncharacterized protein.	Uncharacterized protein.	0.425
A0A059CP56	A0A059CP16	A0A059CP56	A0A059CP16	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A059CP56	EUGRSUZ_C00679	A0A059CP56	A0A059CLY3	Uncharacterized protein.	Uncharacterized protein.	0.740
A0A059CP56	EUGRSUZ_G03029	A0A059CP56	A0A059BHW7	Uncharacterized protein.	Uncharacterized protein.	0.425
EUGRSUZ_A01245	EUGRSUZ_B02268	A0A059DEE9	A0A059D5J7	ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family.	Cell division control protein; Belongs to the CDC6/cdc18 family.	0.575
EUGRSUZ_A01245	EUGRSUZ_B02379	A0A059DEE9	A0A059D525	ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family.	Homeobox domain-containing protein.	0.575
EUGRSUZ_A01245	EUGRSUZ_G03029	A0A059DEE9	A0A059BHW7	ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family.	Uncharacterized protein.	0.454
EUGRSUZ_A02444	EUGRSUZ_G03029	A0A059DIA1	A0A059BHW7	HTH myb-type domain-containing protein.	Uncharacterized protein.	0.481
EUGRSUZ_B02268	EUGRSUZ_A01245	A0A059D5J7	A0A059DEE9	Cell division control protein; Belongs to the CDC6/cdc18 family.	ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family.	0.575
EUGRSUZ_B02268	EUGRSUZ_B02379	A0A059D5J7	A0A059D525	Cell division control protein; Belongs to the CDC6/cdc18 family.	Homeobox domain-containing protein.	0.592
EUGRSUZ_B02268	EUGRSUZ_G03029	A0A059D5J7	A0A059BHW7	Cell division control protein; Belongs to the CDC6/cdc18 family.	Uncharacterized protein.	0.564
EUGRSUZ_B02379	EUGRSUZ_A01245	A0A059D525	A0A059DEE9	Homeobox domain-containing protein.	ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family.	0.575
EUGRSUZ_B02379	EUGRSUZ_B02268	A0A059D525	A0A059D5J7	Homeobox domain-containing protein.	Cell division control protein; Belongs to the CDC6/cdc18 family.	0.592
EUGRSUZ_B02379	EUGRSUZ_G03029	A0A059D525	A0A059BHW7	Homeobox domain-containing protein.	Uncharacterized protein.	0.568
EUGRSUZ_C00679	A0A059CP16	A0A059CLY3	A0A059CP16	Uncharacterized protein.	Uncharacterized protein.	0.740
EUGRSUZ_C00679	A0A059CP56	A0A059CLY3	A0A059CP56	Uncharacterized protein.	Uncharacterized protein.	0.740
EUGRSUZ_C00679	EUGRSUZ_G03029	A0A059CLY3	A0A059BHW7	Uncharacterized protein.	Uncharacterized protein.	0.425
EUGRSUZ_F03677	EUGRSUZ_G03029	A0A059BWJ2	A0A059BHW7	Uncharacterized protein.	Uncharacterized protein.	0.495