L484_020885 protein (Morus notabilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

L484_020885

GRAS domain-containing protein; Belongs to the GRAS family. (776 aa)

Predicted Functional Partners:

L484_019276

0.508

L484_016782

0.506

L484_007692

0.505

L484_024771

0.484

L484_027348

0.478

L484_001821

0.475

L484_001159

0.472

L484_022306

0.470

L484_023297

0.470

L484_005418

0.469

Your Current Organism:

Morus notabilis

NCBI taxonomy Id: 981085
Other names: M. notabilis, Morus notabilis C.K.Schneid.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L484_001159	L484_001821	W9RA10	W9R0G4	Uncharacterized protein.	PWWP domain-containing protein.	0.490
L484_001159	L484_007692	W9RA10	W9RXE5	Uncharacterized protein.	Uncharacterized protein.	0.440
L484_001159	L484_016782	W9RA10	W9S4F8	Uncharacterized protein.	Uncharacterized protein.	0.436
L484_001159	L484_019276	W9RA10	W9SG76	Uncharacterized protein.	Uncharacterized protein.	0.478
L484_001159	L484_020885	W9RA10	W9QP41	Uncharacterized protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.472
L484_001159	L484_027348	W9RA10	W9QSB6	Uncharacterized protein.	Uncharacterized protein.	0.468
L484_001821	L484_001159	W9R0G4	W9RA10	PWWP domain-containing protein.	Uncharacterized protein.	0.490
L484_001821	L484_016782	W9R0G4	W9S4F8	PWWP domain-containing protein.	Uncharacterized protein.	0.469
L484_001821	L484_020885	W9R0G4	W9QP41	PWWP domain-containing protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.475
L484_001821	L484_022306	W9R0G4	W9QRI8	PWWP domain-containing protein.	BHLH domain-containing protein.	0.469
L484_001821	L484_027348	W9R0G4	W9QSB6	PWWP domain-containing protein.	Uncharacterized protein.	0.404
L484_005418	L484_007692	W9RBF0	W9RXE5	OVATE domain-containing protein.	Uncharacterized protein.	0.504
L484_005418	L484_016782	W9RBF0	W9S4F8	OVATE domain-containing protein.	Uncharacterized protein.	0.447
L484_005418	L484_019276	W9RBF0	W9SG76	OVATE domain-containing protein.	Uncharacterized protein.	0.509
L484_005418	L484_020885	W9RBF0	W9QP41	OVATE domain-containing protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.469
L484_007692	L484_001159	W9RXE5	W9RA10	Uncharacterized protein.	Uncharacterized protein.	0.440
L484_007692	L484_005418	W9RXE5	W9RBF0	Uncharacterized protein.	OVATE domain-containing protein.	0.504
L484_007692	L484_016782	W9RXE5	W9S4F8	Uncharacterized protein.	Uncharacterized protein.	0.481
L484_007692	L484_019276	W9RXE5	W9SG76	Uncharacterized protein.	Uncharacterized protein.	0.485
L484_007692	L484_020885	W9RXE5	W9QP41	Uncharacterized protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.505