STRINGSTRING
L484_013868 L484_013868 L484_008614 L484_008614 L484_011279 L484_011279 L484_027112 L484_027112 L484_026877 L484_026877 L484_022110 L484_022110 L484_017742 L484_017742 L484_027418 L484_027418 L484_012608 L484_012608 L484_017131 L484_017131 L484_001336 L484_001336
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L484_013868Squamosa promoter-binding-like protein 1. (1026 aa)    
Predicted Functional Partners:
L484_008614
Crossover junction endonuclease MUS81.
    
 0.617
L484_011279
CHCH domain-containing protein.
   
   0.511
L484_027112
DNA ligase.
     
 0.508
L484_026877
Uncharacterized protein.
    
   0.505
L484_022110
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
    
 0.502
L484_017742
Putative transcription factor KAN2.
  
  0.493
L484_027418
Helicase ARIP4.
  
 
   0.481
L484_012608
OVATE domain-containing protein.
  
     0.472
L484_017131
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.472
L484_001336
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7.
   
   0.465
Your Current Organism:
Morus notabilis
NCBI taxonomy Id: 981085
Other names: M. notabilis, Morus notabilis C.K.Schneid.
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