L484_010527 protein (Morus notabilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

L484_010527

NAC domain-containing protein 8. (279 aa)

Predicted Functional Partners:

L484_005277

0.676

L484_023658

0.676

L484_011653

0.676

L484_021612

0.676

L484_011422

0.632

L484_004172

0.619

L484_015244

0.613

L484_012709

0.609

L484_017232

0.606

L484_004422

0.605

Your Current Organism:

Morus notabilis

NCBI taxonomy Id: 981085
Other names: M. notabilis, Morus notabilis C.K.Schneid.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L484_004172	L484_010527	W9QIZ1	W9QV93	Uncharacterized protein.	NAC domain-containing protein 8.	0.619
L484_004172	L484_015244	W9QIZ1	W9S2Q7	Uncharacterized protein.	NAC domain-containing protein 7.	0.574
L484_004172	L484_017232	W9QIZ1	W9RHY7	Uncharacterized protein.	NAC domain-containing protein 19.	0.576
L484_004422	L484_010527	W9RJQ5	W9QV93	FAS1 domain-containing protein.	NAC domain-containing protein 8.	0.605
L484_004422	L484_011422	W9RJQ5	W9QT99	FAS1 domain-containing protein.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.503
L484_004422	L484_015244	W9RJQ5	W9S2Q7	FAS1 domain-containing protein.	NAC domain-containing protein 7.	0.502
L484_004422	L484_017232	W9RJQ5	W9RHY7	FAS1 domain-containing protein.	NAC domain-containing protein 19.	0.477
L484_005277	L484_010527	W9R0P7	W9QV93	High mobility group B protein 10.	NAC domain-containing protein 8.	0.676
L484_005277	L484_011653	W9R0P7	W9RN13	High mobility group B protein 10.	High mobility group B protein 9.	0.856
L484_005277	L484_021612	W9R0P7	W9RXY4	High mobility group B protein 10.	High mobility group B protein 15.	0.773
L484_005277	L484_023658	W9R0P7	W9RGW6	High mobility group B protein 10.	Putative high mobility group B protein 11.	0.766
L484_010527	L484_004172	W9QV93	W9QIZ1	NAC domain-containing protein 8.	Uncharacterized protein.	0.619
L484_010527	L484_004422	W9QV93	W9RJQ5	NAC domain-containing protein 8.	FAS1 domain-containing protein.	0.605
L484_010527	L484_005277	W9QV93	W9R0P7	NAC domain-containing protein 8.	High mobility group B protein 10.	0.676
L484_010527	L484_011422	W9QV93	W9QT99	NAC domain-containing protein 8.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.632
L484_010527	L484_011653	W9QV93	W9RN13	NAC domain-containing protein 8.	High mobility group B protein 9.	0.676
L484_010527	L484_012709	W9QV93	W9S1H8	NAC domain-containing protein 8.	Non-specific lipid-transfer protein; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.609
L484_010527	L484_015244	W9QV93	W9S2Q7	NAC domain-containing protein 8.	NAC domain-containing protein 7.	0.613
L484_010527	L484_017232	W9QV93	W9RHY7	NAC domain-containing protein 8.	NAC domain-containing protein 19.	0.606
L484_010527	L484_021612	W9QV93	W9RXY4	NAC domain-containing protein 8.	High mobility group B protein 15.	0.676