L484_026015 protein (Morus notabilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

L484_026015

BES1_N domain-containing protein. (207 aa)

Predicted Functional Partners:

L484_019561

0.500

L484_001603

0.490

L484_002082

0.470

L484_014210

0.449

L484_023484

0.425

L484_000923

0.417

L484_006407

0.412

L484_002490

0.412

L484_026403

0.409

L484_023455

0.409

Your Current Organism:

Morus notabilis

NCBI taxonomy Id: 981085
Other names: M. notabilis, Morus notabilis C.K.Schneid.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L484_000923	L484_001603	W9S402	W9RY57	Uncharacterized protein.	BZIP domain-containing protein.	0.419
L484_000923	L484_002490	W9S402	W9RT48	Uncharacterized protein.	Protein ETHYLENE INSENSITIVE 3.	0.427
L484_000923	L484_023484	W9S402	W9RLJ3	Uncharacterized protein.	LOB domain-containing protein.	0.410
L484_000923	L484_026015	W9S402	W9RWC9	Uncharacterized protein.	BES1_N domain-containing protein.	0.417
L484_001603	L484_000923	W9RY57	W9S402	BZIP domain-containing protein.	Uncharacterized protein.	0.419
L484_001603	L484_019561	W9RY57	W9SKA1	BZIP domain-containing protein.	BHLH domain-containing protein.	0.475
L484_001603	L484_023455	W9RY57	W9RNW8	BZIP domain-containing protein.	Uncharacterized protein.	0.484
L484_001603	L484_026015	W9RY57	W9RWC9	BZIP domain-containing protein.	BES1_N domain-containing protein.	0.490
L484_001603	L484_026403	W9RY57	W9QXZ9	BZIP domain-containing protein.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.427
L484_002082	L484_026015	W9QQR3	W9RWC9	LOB domain-containing protein.	BES1_N domain-containing protein.	0.470
L484_002490	L484_000923	W9RT48	W9S402	Protein ETHYLENE INSENSITIVE 3.	Uncharacterized protein.	0.427
L484_002490	L484_023484	W9RT48	W9RLJ3	Protein ETHYLENE INSENSITIVE 3.	LOB domain-containing protein.	0.424
L484_002490	L484_026015	W9RT48	W9RWC9	Protein ETHYLENE INSENSITIVE 3.	BES1_N domain-containing protein.	0.412
L484_006407	L484_026015	W9QM94	W9RWC9	LOB domain-containing protein.	BES1_N domain-containing protein.	0.412
L484_014210	L484_019561	W9S2W1	W9SKA1	LEA_2 domain-containing protein.	BHLH domain-containing protein.	0.460
L484_014210	L484_026015	W9S2W1	W9RWC9	LEA_2 domain-containing protein.	BES1_N domain-containing protein.	0.449
L484_019561	L484_001603	W9SKA1	W9RY57	BHLH domain-containing protein.	BZIP domain-containing protein.	0.475
L484_019561	L484_014210	W9SKA1	W9S2W1	BHLH domain-containing protein.	LEA_2 domain-containing protein.	0.460
L484_019561	L484_026015	W9SKA1	W9RWC9	BHLH domain-containing protein.	BES1_N domain-containing protein.	0.500
L484_023455	L484_001603	W9RNW8	W9RY57	Uncharacterized protein.	BZIP domain-containing protein.	0.484