L484_023326 protein (Morus notabilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

L484_023326

Two-component response regulator-like protein. (596 aa)

Predicted Functional Partners:

L484_005887

0.559

L484_025774

0.559

L484_001200

0.540

L484_026277

0.536

L484_009007

0.533

L484_011285

0.499

L484_002097

0.499

L484_010876

0.494

L484_010587

0.474

L484_022189

0.434

Your Current Organism:

Morus notabilis

NCBI taxonomy Id: 981085
Other names: M. notabilis, Morus notabilis C.K.Schneid.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L484_001200	L484_023326	W9SDM6	W9RZ29	Histidine-containing phosphotransfer protein 1.	Two-component response regulator-like protein.	0.540
L484_002097	L484_023326	W9RUH4	W9RZ29	Histidine-containing phosphotransfer protein 1.	Two-component response regulator-like protein.	0.499
L484_002097	L484_025774	W9RUH4	W9R3T2	Histidine-containing phosphotransfer protein 1.	Histidine-containing phosphotransfer protein 6.	0.640
L484_005887	L484_023326	W9QZ22	W9RZ29	Histidine-containing phosphotransfer protein 4.	Two-component response regulator-like protein.	0.559
L484_009007	L484_023326	W9RF85	W9RZ29	Histidine-containing phosphotransfer protein 1.	Two-component response regulator-like protein.	0.533
L484_010587	L484_023326	W9QDY9	W9RZ29	Uncharacterized protein.	Two-component response regulator-like protein.	0.474
L484_010876	L484_023326	W9R9A0	W9RZ29	Histidine-containing phosphotransfer protein 4.	Two-component response regulator-like protein.	0.494
L484_011285	L484_023326	W9RSC1	W9RZ29	Histidine-containing phosphotransfer protein 1.	Two-component response regulator-like protein.	0.499
L484_011285	L484_025774	W9RSC1	W9R3T2	Histidine-containing phosphotransfer protein 1.	Histidine-containing phosphotransfer protein 6.	0.640
L484_022189	L484_023326	W9R094	W9RZ29	Uncharacterized protein.	Two-component response regulator-like protein.	0.434
L484_023326	L484_001200	W9RZ29	W9SDM6	Two-component response regulator-like protein.	Histidine-containing phosphotransfer protein 1.	0.540
L484_023326	L484_002097	W9RZ29	W9RUH4	Two-component response regulator-like protein.	Histidine-containing phosphotransfer protein 1.	0.499
L484_023326	L484_005887	W9RZ29	W9QZ22	Two-component response regulator-like protein.	Histidine-containing phosphotransfer protein 4.	0.559
L484_023326	L484_009007	W9RZ29	W9RF85	Two-component response regulator-like protein.	Histidine-containing phosphotransfer protein 1.	0.533
L484_023326	L484_010587	W9RZ29	W9QDY9	Two-component response regulator-like protein.	Uncharacterized protein.	0.474
L484_023326	L484_010876	W9RZ29	W9R9A0	Two-component response regulator-like protein.	Histidine-containing phosphotransfer protein 4.	0.494
L484_023326	L484_011285	W9RZ29	W9RSC1	Two-component response regulator-like protein.	Histidine-containing phosphotransfer protein 1.	0.499
L484_023326	L484_022189	W9RZ29	W9R094	Two-component response regulator-like protein.	Uncharacterized protein.	0.434
L484_023326	L484_025774	W9RZ29	W9R3T2	Two-component response regulator-like protein.	Histidine-containing phosphotransfer protein 6.	0.559
L484_023326	L484_026277	W9RZ29	W9RH06	Two-component response regulator-like protein.	Histidine-containing phosphotransfer protein 4.	0.536