L484_010665 protein (Morus notabilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

L484_010665

Transcription factor RF2b. (420 aa)

Predicted Functional Partners:

L484_023563

0.685

L484_023564

0.685

L484_017159

0.586

L484_017196

0.497

L484_025188

0.497

L484_025187

0.497

L484_007701

0.496

L484_008224

0.481

L484_007067

0.475

L484_007964

0.451

Your Current Organism:

Morus notabilis

NCBI taxonomy Id: 981085
Other names: M. notabilis, Morus notabilis C.K.Schneid.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L484_007067	L484_007701	W9RW22	W9S872	Uncharacterized protein.	PWWP domain-containing protein.	0.572
L484_007067	L484_010665	W9RW22	W9SAC2	Uncharacterized protein.	Transcription factor RF2b.	0.475
L484_007701	L484_007067	W9S872	W9RW22	PWWP domain-containing protein.	Uncharacterized protein.	0.572
L484_007701	L484_008224	W9S872	W9RVN3	PWWP domain-containing protein.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.460
L484_007701	L484_010665	W9S872	W9SAC2	PWWP domain-containing protein.	Transcription factor RF2b.	0.496
L484_007964	L484_010665	W9QPP4	W9SAC2	BHLH domain-containing protein.	Transcription factor RF2b.	0.451
L484_007964	L484_023563	W9QPP4	W9R714	BHLH domain-containing protein.	Chromatin structure-remodeling complex subunit snf21.	0.498
L484_007964	L484_023564	W9QPP4	W9RVK1	BHLH domain-containing protein.	SWI/SNF chromatin-remodeling complex subunit snf22.	0.498
L484_008224	L484_007701	W9RVN3	W9S872	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	PWWP domain-containing protein.	0.460
L484_008224	L484_010665	W9RVN3	W9SAC2	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Transcription factor RF2b.	0.481
L484_010665	L484_007067	W9SAC2	W9RW22	Transcription factor RF2b.	Uncharacterized protein.	0.475
L484_010665	L484_007701	W9SAC2	W9S872	Transcription factor RF2b.	PWWP domain-containing protein.	0.496
L484_010665	L484_007964	W9SAC2	W9QPP4	Transcription factor RF2b.	BHLH domain-containing protein.	0.451
L484_010665	L484_008224	W9SAC2	W9RVN3	Transcription factor RF2b.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.481
L484_010665	L484_017159	W9SAC2	W9QKX2	Transcription factor RF2b.	Serine/threonine-protein kinase ULK3; Belongs to the protein kinase superfamily.	0.586
L484_010665	L484_017196	W9SAC2	W9R3H6	Transcription factor RF2b.	Outer envelope protein 64.	0.497
L484_010665	L484_023563	W9SAC2	W9R714	Transcription factor RF2b.	Chromatin structure-remodeling complex subunit snf21.	0.685
L484_010665	L484_023564	W9SAC2	W9RVK1	Transcription factor RF2b.	SWI/SNF chromatin-remodeling complex subunit snf22.	0.685
L484_010665	L484_025187	W9SAC2	W9RZR3	Transcription factor RF2b.	Translocon at the outer membrane of chloroplasts 64.	0.497
L484_010665	L484_025188	W9SAC2	W9RJ26	Transcription factor RF2b.	Outer envelope protein 64.	0.497