L484_020579 protein (Morus notabilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

L484_020579

NAC domain-containing protein 8. (1077 aa)

Predicted Functional Partners:

L484_002028

0.565

L484_014904

0.470

L484_010867

0.462

L484_010865

0.460

L484_020867

0.458

L484_027226

0.454

L484_015245

0.452

L484_010866

0.447

L484_014272

0.422

L484_024473

0.418

Your Current Organism:

Morus notabilis

NCBI taxonomy Id: 981085
Other names: M. notabilis, Morus notabilis C.K.Schneid.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L484_002028	L484_014272	W9RLW8	W9RYG2	mRNA decapping complex subunit 2.	Exosome complex component.	0.912
L484_002028	L484_020579	W9RLW8	W9S0R6	mRNA decapping complex subunit 2.	NAC domain-containing protein 8.	0.565
L484_002028	L484_024473	W9RLW8	W9RT30	mRNA decapping complex subunit 2.	Uncharacterized protein.	0.874
L484_010865	L484_020579	W9SCC5	W9S0R6	Malectin_like domain-containing protein.	NAC domain-containing protein 8.	0.460
L484_010866	L484_020579	W9T095	W9S0R6	Malectin_like domain-containing protein.	NAC domain-containing protein 8.	0.447
L484_010867	L484_020579	W9SK09	W9S0R6	Malectin_like domain-containing protein.	NAC domain-containing protein 8.	0.462
L484_014272	L484_002028	W9RYG2	W9RLW8	Exosome complex component.	mRNA decapping complex subunit 2.	0.912
L484_014272	L484_020579	W9RYG2	W9S0R6	Exosome complex component.	NAC domain-containing protein 8.	0.422
L484_014272	L484_024473	W9RYG2	W9RT30	Exosome complex component.	Uncharacterized protein.	0.999
L484_014904	L484_020579	W9QZ35	W9S0R6	Uncharacterized protein.	NAC domain-containing protein 8.	0.470
L484_015245	L484_020579	W9S5B9	W9S0R6	Remorin_C domain-containing protein.	NAC domain-containing protein 8.	0.452
L484_020579	L484_002028	W9S0R6	W9RLW8	NAC domain-containing protein 8.	mRNA decapping complex subunit 2.	0.565
L484_020579	L484_010865	W9S0R6	W9SCC5	NAC domain-containing protein 8.	Malectin_like domain-containing protein.	0.460
L484_020579	L484_010866	W9S0R6	W9T095	NAC domain-containing protein 8.	Malectin_like domain-containing protein.	0.447
L484_020579	L484_010867	W9S0R6	W9SK09	NAC domain-containing protein 8.	Malectin_like domain-containing protein.	0.462
L484_020579	L484_014272	W9S0R6	W9RYG2	NAC domain-containing protein 8.	Exosome complex component.	0.422
L484_020579	L484_014904	W9S0R6	W9QZ35	NAC domain-containing protein 8.	Uncharacterized protein.	0.470
L484_020579	L484_015245	W9S0R6	W9S5B9	NAC domain-containing protein 8.	Remorin_C domain-containing protein.	0.452
L484_020579	L484_020867	W9S0R6	W9QGM8	NAC domain-containing protein 8.	AAI domain-containing protein.	0.458
L484_020579	L484_024473	W9S0R6	W9RT30	NAC domain-containing protein 8.	Uncharacterized protein.	0.418