STRINGSTRING
LOC104600031 LOC104600031 LOC104600869 LOC104600869 LOC104605324 LOC104605324 LOC104600836 LOC104600836 LOC104607296 LOC104607296 LOC104586109 LOC104586109 LOC104599561 LOC104599561 LOC104591710 LOC104591710 LOC104592893 LOC104592893 LOC104592404 LOC104592404 LOC104589649 LOC104589649
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
LOC104600031Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (439 aa)    
Predicted Functional Partners:
LOC104600869
Chromatin modification-related protein MEAF6.
    
 0.973
LOC104605324
Transformation/transcription domain-associated protein-like; Belongs to the PI3/PI4-kinase family.
   
 0.973
LOC104600836
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.969
LOC104607296
Protein MRG1.
    
 0.968
LOC104586109
SWR1-complex protein 4.
   
 0.947
LOC104599561
Actin-related protein 4; Belongs to the actin family.
   
 0.929
LOC104591710
RuvB-like helicase; Belongs to the RuvB family.
   
 0.922
LOC104592893
RuvB-like helicase; Belongs to the RuvB family.
   
 0.922
LOC104592404
Uncharacterized protein LOC104592404 isoform X1.
   
 0.862
LOC104589649
Histone acetyltransferase GCN5 isoform X1.
  
 0.847
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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