LOC104601846 protein (Nelumbo nucifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104601846

Transcription factor HBI1. (478 aa)

Predicted Functional Partners:

LOC104606298

0.828

LOC104613418

0.828

LOC104609948

0.826

LOC104604616

0.819

LOC104588818

0.781

LOC104589420

0.781

LOC104610113

0.781

LOC104593849

0.711

LOC104598519

0.687

LOC104602349

0.687

Your Current Organism:

Nelumbo nucifera

NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104588818	LOC104589420	A0A1U7ZCZ3	A0A1U7ZF00	Protein transport protein Sec24-like At3g07100.	Protein transport protein Sec24-like At3g07100.	0.554
LOC104588818	LOC104593849	A0A1U7ZCZ3	A0A1U7ZTF0	Protein transport protein Sec24-like At3g07100.	Protein transport protein Sec24-like At4g32640 isoform X1.	0.980
LOC104588818	LOC104598519	A0A1U7ZCZ3	A0A1U7ZYK2	Protein transport protein Sec24-like At3g07100.	Protein transport protein sec16.	0.925
LOC104588818	LOC104601846	A0A1U7ZCZ3	A0A1U8ALR3	Protein transport protein Sec24-like At3g07100.	Transcription factor HBI1.	0.781
LOC104588818	LOC104602349	A0A1U7ZCZ3	A0A1U8ABU6	Protein transport protein Sec24-like At3g07100.	Protein transport protein sec16.	0.925
LOC104588818	LOC104604616	A0A1U7ZCZ3	A0A1U8AWI9	Protein transport protein Sec24-like At3g07100.	SEC12-like protein 1.	0.682
LOC104588818	LOC104606298	A0A1U7ZCZ3	A0A1U8ATF9	Protein transport protein Sec24-like At3g07100.	Protein transport protein SEC31 homolog B-like.	0.972
LOC104588818	LOC104609948	A0A1U7ZCZ3	A0A1U8B5I1	Protein transport protein Sec24-like At3g07100.	SEC12-like protein 2.	0.735
LOC104588818	LOC104610113	A0A1U7ZCZ3	A0A1U8BER5	Protein transport protein Sec24-like At3g07100.	Protein transport protein Sec24-like At3g07100.	0.554
LOC104588818	LOC104613418	A0A1U7ZCZ3	A0A1U8BPQ2	Protein transport protein Sec24-like At3g07100.	Protein transport protein SEC31 homolog B-like.	0.972
LOC104589420	LOC104588818	A0A1U7ZF00	A0A1U7ZCZ3	Protein transport protein Sec24-like At3g07100.	Protein transport protein Sec24-like At3g07100.	0.554
LOC104589420	LOC104593849	A0A1U7ZF00	A0A1U7ZTF0	Protein transport protein Sec24-like At3g07100.	Protein transport protein Sec24-like At4g32640 isoform X1.	0.981
LOC104589420	LOC104598519	A0A1U7ZF00	A0A1U7ZYK2	Protein transport protein Sec24-like At3g07100.	Protein transport protein sec16.	0.925
LOC104589420	LOC104601846	A0A1U7ZF00	A0A1U8ALR3	Protein transport protein Sec24-like At3g07100.	Transcription factor HBI1.	0.781
LOC104589420	LOC104602349	A0A1U7ZF00	A0A1U8ABU6	Protein transport protein Sec24-like At3g07100.	Protein transport protein sec16.	0.925
LOC104589420	LOC104604616	A0A1U7ZF00	A0A1U8AWI9	Protein transport protein Sec24-like At3g07100.	SEC12-like protein 1.	0.682
LOC104589420	LOC104606298	A0A1U7ZF00	A0A1U8ATF9	Protein transport protein Sec24-like At3g07100.	Protein transport protein SEC31 homolog B-like.	0.978
LOC104589420	LOC104609948	A0A1U7ZF00	A0A1U8B5I1	Protein transport protein Sec24-like At3g07100.	SEC12-like protein 2.	0.682
LOC104589420	LOC104610113	A0A1U7ZF00	A0A1U8BER5	Protein transport protein Sec24-like At3g07100.	Protein transport protein Sec24-like At3g07100.	0.543
LOC104589420	LOC104613418	A0A1U7ZF00	A0A1U8BPQ2	Protein transport protein Sec24-like At3g07100.	Protein transport protein SEC31 homolog B-like.	0.978