LOC104604243 protein (Nelumbo nucifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104604243

Myb-related protein 308-like. (241 aa)

Predicted Functional Partners:

LOC104585748

0.487

LOC104592490

0.434

LOC104585812

0.427

LOC104590447

0.422

LOC104585772

0.418

LOC104602549

0.416

LOC104606732

0.415

Your Current Organism:

Nelumbo nucifera

NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104585748	LOC104585772	A0A1U7YQ77	A0A1U8QBF0	Dihydroflavonol 4-reductase isoform X1.	Protein LHY-like.	0.499
LOC104585748	LOC104604243	A0A1U7YQ77	A0A1U8AUG7	Dihydroflavonol 4-reductase isoform X1.	Myb-related protein 308-like.	0.487
LOC104585772	LOC104585748	A0A1U8QBF0	A0A1U7YQ77	Protein LHY-like.	Dihydroflavonol 4-reductase isoform X1.	0.499
LOC104585772	LOC104604243	A0A1U8QBF0	A0A1U8AUG7	Protein LHY-like.	Myb-related protein 308-like.	0.418
LOC104585812	LOC104604243	A0A1U7YQE7	A0A1U8AUG7	Basic blue protein-like.	Myb-related protein 308-like.	0.427
LOC104590447	LOC104592490	A0A1U7ZGY0	A0A1U7ZPZ2	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	TIMELESS-interacting protein isoform X1; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.	0.442
LOC104590447	LOC104604243	A0A1U7ZGY0	A0A1U8AUG7	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	Myb-related protein 308-like.	0.422
LOC104592490	LOC104590447	A0A1U7ZPZ2	A0A1U7ZGY0	TIMELESS-interacting protein isoform X1; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	0.442
LOC104592490	LOC104604243	A0A1U7ZPZ2	A0A1U8AUG7	TIMELESS-interacting protein isoform X1; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.	Myb-related protein 308-like.	0.434
LOC104602549	LOC104604243	A0A1U8AFZ4	A0A1U8AUG7	Uncharacterized protein LOC104602549.	Myb-related protein 308-like.	0.416
LOC104604243	LOC104585748	A0A1U8AUG7	A0A1U7YQ77	Myb-related protein 308-like.	Dihydroflavonol 4-reductase isoform X1.	0.487
LOC104604243	LOC104585772	A0A1U8AUG7	A0A1U8QBF0	Myb-related protein 308-like.	Protein LHY-like.	0.418
LOC104604243	LOC104585812	A0A1U8AUG7	A0A1U7YQE7	Myb-related protein 308-like.	Basic blue protein-like.	0.427
LOC104604243	LOC104590447	A0A1U8AUG7	A0A1U7ZGY0	Myb-related protein 308-like.	Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.	0.422
LOC104604243	LOC104592490	A0A1U8AUG7	A0A1U7ZPZ2	Myb-related protein 308-like.	TIMELESS-interacting protein isoform X1; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.	0.434
LOC104604243	LOC104602549	A0A1U8AUG7	A0A1U8AFZ4	Myb-related protein 308-like.	Uncharacterized protein LOC104602549.	0.416
LOC104604243	LOC104606732	A0A1U8AUG7	A0A1U8B3U0	Myb-related protein 308-like.	Basic blue protein-like.	0.415
LOC104606732	LOC104604243	A0A1U8B3U0	A0A1U8AUG7	Basic blue protein-like.	Myb-related protein 308-like.	0.415