STRINGSTRING
LOC104612506 LOC104612506 LOC104587169 LOC104587169 LOC104588172 LOC104588172 LOC104595741 LOC104595741 LOC104612326 LOC104612326 LOC104587598 LOC104587598 LOC104586437 LOC104586437 LOC104587170 LOC104587170 LOC104587681 LOC104587681 LOC104598672 LOC104598672 LOC104607138 LOC104607138
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104612506Splicing factor U2af small subunit B-like. (322 aa)    
Predicted Functional Partners:
LOC104587169
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.979
LOC104588172
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.979
LOC104595741
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.979
LOC104612326
Splicing factor U2af large subunit A isoform X1.
   
 0.978
LOC104587598
Splicing factor U2af small subunit B-like.
  
  
 
0.900
LOC104586437
Stem-specific protein TSJT1-like.
   
 0.803
LOC104587170
Stem-specific protein TSJT1.
   
 0.803
LOC104587681
PLASMODESMATA CALLOSE-BINDING PROTEIN 5-like.
   
 0.803
LOC104598672
Stem-specific protein TSJT1.
   
 0.803
LOC104607138
Uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02-like; Belongs to the glycosyl hydrolase 17 family.
   
 0.803
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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