Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Your Input:
|
Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | LmjF.23.0460 | trypanothione synthetase, putative.[Source-GeneDB;Acc-LmjF.23.0460] (265 aa) | ||||||||||||
Predicted Functional Partners:
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 | LmjF.05.0310 | glutaredoxin-like protein.[Source-GeneDB;Acc-LmjF.05.0310] (180 aa) |
 |
0.825 | ||||||||||
 | L3291.03 | spermidine synthase.[Source-GeneDB;Acc-LmjF.04.0580] (300 aa) |
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0.825 | ||||||||||
 | LmjF.26.2680 | hypothetical protein, unknown function.[Source-GeneDB;Acc-LmjF.26.2680] (377 aa) |
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0.821 | ||||||||||
 | MRPA | ABC-thiol transporter.[Source-GeneDB;Acc-LmjF.23.0250] (1568 aa) |
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0.821 | ||||||||||
 | NT3 | nucleobase transporter.[Source-GeneDB;Acc-LmjF.13.1210] (501 aa) |
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0.821 | ||||||||||
 | LmjF.23.0040 | peroxidoxin.[Source-GeneDB;Acc-LmjF.23.0040] (226 aa) |
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0.700 | ||||||||||
Your Current Organism:
Leishmania major
NCBI taxonomy Id: 5664
Other names: L. major, L. major species complex, Leishmania (Leishmania) major, Leishmania major, Leishmania major species complex, Leishmania tropica major
Other names: L. major, L. major species complex, Leishmania (Leishmania) major, Leishmania major, Leishmania major species complex, Leishmania tropica major
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