Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Your Input:
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Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | TGME49_063420 | Ubiquitin carboxyl-terminal hydrolase (1100 aa) | ||||||||||||
Predicted Functional Partners:
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 | TGME49_089330 | Ubiquitin carboxyl-terminal hydrolase (2100 aa) |
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0.759 | |||||||||
 | cullin | Cullin homolog, putative; Cullin, putative (808 aa) |
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0.726 | |||||||||
 | TGME49_001770 | Cullin 3, putative (929 aa) |
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0.726 | |||||||||
 | TGME49_063470 | Ubiquitin carboxyl-terminal hydrolase isozyme, putative (264 aa) |
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0.696 | |||||||||
 | TGME49_023450 | Ubiquitin carboxyl-terminal hydrolase, putative (537 aa) |
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0.688 | |||||||||
 | TGME49_111090 | Ubiquitin carboxyl-terminal hydrolase (607 aa) |
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0.675 | ||||||||||
 | TGME49_077890 | Putative uncharacterized protein (2530 aa) |
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0.629 | ||||||||||
 | TGME49_026940 | Ubiquitin carboxyl-terminal hydrolase, putative (1205 aa) |
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0.629 | ||||||||||
 | TGME49_054600 | Ubiquitin, putative (77 aa) |
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0.625 | |||||||||
 | TGME49_010750 | Phenylalanyl-tRNA synthetase, putative (733 aa) |
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0.418 | ||||||||||
Your Current Organism:
Toxoplasma gondii
NCBI taxonomy Id: 5811
Other names: T. gondii, Toxoplasma, Toxoplasma gondii
Other names: T. gondii, Toxoplasma, Toxoplasma gondii
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