PBANKA_040740 protein (Plasmodium berghei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Size

small nodes:
protein of unknown 3D structure

large nodes:
some 3D structure is known or predicted

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

PBANKA_040740

annotation not available (1719 aa)

Predicted Functional Partners:

PBANKA_040560

0.999

PBANKA_080770

0.999

PBANKA_080590

0.991

PBANKA_062240

0.991

PBANKA_060950

0.991

kinesin

0.991

PBANKA_122240

0.956

PBANKA_093550

0.929

PBANKA_133240

0.921

PBANKA_132950

0.921

Your Current Organism:

Plasmodium berghei

NCBI taxonomy Id: 5821
Other names: P. berghei, Plasmodium berghei

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TSV: tab separated values - can be opened in Excel

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PBANKA_040560	PBANKA_040740	PBANKA_040560	PBANKA_040740	EB1	annotation not available	0.999
PBANKA_040560	PBANKA_060950	PBANKA_040560	PBANKA_060950	EB1	Kinesin-related protein, putative	0.995
PBANKA_040560	PBANKA_062240	PBANKA_040560	PBANKA_062240	EB1	hypothetical protein	0.995
PBANKA_040560	PBANKA_080590	PBANKA_040560	PBANKA_080590	EB1	Kinesin, putative	0.995
PBANKA_040560	PBANKA_080770	PBANKA_040560	PBANKA_080770	EB1	annotation not available	0.971
PBANKA_040560	PBANKA_093550	PBANKA_040560	PBANKA_093550	EB1	hypothetical protein	0.423
PBANKA_040560	kinesin	PBANKA_040560	PBANKA_020270	EB1	hypothetical protein	0.995
PBANKA_040740	PBANKA_040560	PBANKA_040740	PBANKA_040560	annotation not available	EB1	0.999
PBANKA_040740	PBANKA_060950	PBANKA_040740	PBANKA_060950	annotation not available	Kinesin-related protein, putative	0.991
PBANKA_040740	PBANKA_062240	PBANKA_040740	PBANKA_062240	annotation not available	hypothetical protein	0.991
PBANKA_040740	PBANKA_080590	PBANKA_040740	PBANKA_080590	annotation not available	Kinesin, putative	0.991
PBANKA_040740	PBANKA_080770	PBANKA_040740	PBANKA_080770	annotation not available	annotation not available	0.999
PBANKA_040740	PBANKA_093550	PBANKA_040740	PBANKA_093550	annotation not available	hypothetical protein	0.929
PBANKA_040740	PBANKA_122240	PBANKA_040740	PBANKA_122240	annotation not available	Pb-reticulocyte binding protein	0.956
PBANKA_040740	PBANKA_132950	PBANKA_040740	PBANKA_132950	annotation not available	Serine/threonine-protein phosphatase	0.921
PBANKA_040740	PBANKA_133240	PBANKA_040740	PBANKA_133240	annotation not available	hypothetical protein	0.921
PBANKA_040740	kinesin	PBANKA_040740	PBANKA_020270	annotation not available	hypothetical protein	0.991
PBANKA_060950	PBANKA_040560	PBANKA_060950	PBANKA_040560	Kinesin-related protein, putative	EB1	0.995
PBANKA_060950	PBANKA_040740	PBANKA_060950	PBANKA_040740	Kinesin-related protein, putative	annotation not available	0.991
PBANKA_060950	PBANKA_080770	PBANKA_060950	PBANKA_080770	Kinesin-related protein, putative	annotation not available	0.976

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