Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
|
Your Input:
|
Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | PBANKA_091500 | Apical membrane antigen-1 (556 aa) | ||||||||||||
Predicted Functional Partners:
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 | PBANKA_131570 | hypothetical protein (2081 aa) |
 |
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0.976 | ||||||||
 | PBANKA_071310 | hypothetical protein (1148 aa) |
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0.921 | |||||||||
 | msa1 | Merozoite surface protein-1 (1791 aa) |
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0.825 | |||||||||
 | pbebl | Erythrocyte-binding-like protein (827 aa) |
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0.649 | |||||||||
 | PBANKA_121910 | hypothetical protein (247 aa) |
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0.570 | ||||||||||
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5821
Other names: P. berghei, Plasmodium berghei
Other names: P. berghei, Plasmodium berghei
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