Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
|
Your Input:
|
Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
|||||
 | PBANKA_101620 | hypothetical protein (1944 aa) | ||||||||||||
Predicted Functional Partners:
| ||||||||||||||
 | PBANKA_071930 | Bifunctional dihydrofolate reductase-thymidylate synthase Dihydrofolate reductase Thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, DNA precursor synthesis, and for the conversion of dUMP to dTMP (By similarity) (587 aa) |
 |
|
0.793 | |||||||||
 | PBANKA_082680 | protein kinase (1260 aa) |
|
0.629 | ||||||||||
 | PBANKA_110320 | protein kinase (722 aa) |
|
0.628 | ||||||||||
 | PBANKA_094010 | protein kinase (1313 aa) |
|
0.627 | ||||||||||
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5821
Other names: P. berghei, Plasmodium berghei
Other names: P. berghei, Plasmodium berghei
Share
