PBANKA_103560 protein (Plasmodium berghei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Size

small nodes:
protein of unknown 3D structure

large nodes:
some 3D structure is known or predicted

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PBANKA_103560

hypothetical protein (1128 aa)

Predicted Functional Partners:

PBANKA_121930

0.985

hsp70

0.981

PBANKA_091440

0.977

PBANKA_135720

0.970

PBANKA_081890

0.968

PBANKA_092490

0.952

PBANKA_130780

0.951

PBANKA_092990

0.951

PBANKA_080570

0.951

PBANKA_061200

0.941

Your Current Organism:

Plasmodium berghei

NCBI taxonomy Id: 5821
Other names: P. berghei, Plasmodium berghei

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PBANKA_061200	PBANKA_080570	PBANKA_061200	PBANKA_080570	ATP-dependent Clp protease proteolytic subunit	hypothetical protein	0.468
PBANKA_061200	PBANKA_081890	PBANKA_061200	PBANKA_081890	ATP-dependent Clp protease proteolytic subunit	Heat shock protein, putative	0.509
PBANKA_061200	PBANKA_091440	PBANKA_061200	PBANKA_091440	ATP-dependent Clp protease proteolytic subunit	Heat shock protein hsp70 homologue, putative	0.509
PBANKA_061200	PBANKA_092990	PBANKA_061200	PBANKA_092990	ATP-dependent Clp protease proteolytic subunit	heat shock protein 90	0.468
PBANKA_061200	PBANKA_103560	PBANKA_061200	PBANKA_103560	ATP-dependent Clp protease proteolytic subunit	hypothetical protein	0.941
PBANKA_061200	PBANKA_121930	PBANKA_061200	PBANKA_121930	ATP-dependent Clp protease proteolytic subunit	HSP70	0.509
PBANKA_061200	PBANKA_130780	PBANKA_061200	PBANKA_130780	ATP-dependent Clp protease proteolytic subunit	annotation not available	0.468
PBANKA_061200	PBANKA_135720	PBANKA_061200	PBANKA_135720	ATP-dependent Clp protease proteolytic subunit	Putative uncharacterized protein	0.509
PBANKA_061200	hsp70	PBANKA_061200	PBANKA_071190	ATP-dependent Clp protease proteolytic subunit	Heat shock protein 70	0.509
PBANKA_080570	PBANKA_061200	PBANKA_080570	PBANKA_061200	hypothetical protein	ATP-dependent Clp protease proteolytic subunit	0.468
PBANKA_080570	PBANKA_081890	PBANKA_080570	PBANKA_081890	hypothetical protein	Heat shock protein, putative	0.851
PBANKA_080570	PBANKA_091440	PBANKA_080570	PBANKA_091440	hypothetical protein	Heat shock protein hsp70 homologue, putative	0.908
PBANKA_080570	PBANKA_103560	PBANKA_080570	PBANKA_103560	hypothetical protein	hypothetical protein	0.951
PBANKA_080570	PBANKA_121930	PBANKA_080570	PBANKA_121930	hypothetical protein	HSP70	0.934
PBANKA_080570	PBANKA_135720	PBANKA_080570	PBANKA_135720	hypothetical protein	Putative uncharacterized protein	0.875
PBANKA_080570	hsp70	PBANKA_080570	PBANKA_071190	hypothetical protein	Heat shock protein 70	0.958
PBANKA_081890	PBANKA_061200	PBANKA_081890	PBANKA_061200	Heat shock protein, putative	ATP-dependent Clp protease proteolytic subunit	0.509
PBANKA_081890	PBANKA_080570	PBANKA_081890	PBANKA_080570	Heat shock protein, putative	hypothetical protein	0.851
PBANKA_081890	PBANKA_092990	PBANKA_081890	PBANKA_092990	Heat shock protein, putative	heat shock protein 90	0.851
PBANKA_081890	PBANKA_103560	PBANKA_081890	PBANKA_103560	Heat shock protein, putative	hypothetical protein	0.968

page 1 of 4

Experiments

Neighborhood

Databases

Cooccurrence

Textmining

Fusion

Coexpression