Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Your Input:
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Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | PBANKA_104010 | choline kinase (441 aa) | ||||||||||||
Predicted Functional Partners:
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 | PBANKA_141510 | cholinephosphate cytidylyltransferase (867 aa) |
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0.985 | ||||||||
 | PBANKA_136050 | ethanolamine-phosphate cytidylyltransferase (559 aa) |
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0.837 | |||||||||
 | PBANKA_082870 | phosphatidylserine decarboxylase (353 aa) |
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0.785 | |||||||||
 | PBANKA_101140 | DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (By similarity) (1472 aa) |
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0.784 | ||||||||||
 | PBANKA_071060 | phosphatidylglycerophosphate synthase (596 aa) |
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0.761 | ||||||||
 | PBANKA_112700 | Ethanolaminephosphotransferase, putative (377 aa) |
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0.758 | ||||||||||
 | PBANKA_060270 | Nucleosome assembly protein 1, putative (345 aa) |
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0.743 | |||||||||
 | PBANKA_123020 | cdc2-like protein kinase (712 aa) |
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0.722 | |||||||||
 | PBANKA_040180 | annotation not available (1099 aa) |
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0.630 | |||||||||
 | PBANKA_135090 | CDK-related protein kinase 6, putative (301 aa) |
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0.568 | ||||||||||
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5821
Other names: P. berghei, Plasmodium berghei
Other names: P. berghei, Plasmodium berghei
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