PBANKA_120660 protein (Plasmodium berghei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Size

small nodes:
protein of unknown 3D structure

large nodes:
some 3D structure is known or predicted

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

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Textmining

[Homology]

Score

PBANKA_120660

hypothetical protein (447 aa)

Predicted Functional Partners:

PBANKA_135180

0.999

PBANKA_050220

0.999

PBANKA_122290

0.999

PBANKA_081390

0.999

PBANKA_030360

0.999

PBANKA_132970

0.999

PBANKA_051450

0.999

PBANKA_041030

0.999

PBANKA_091900

0.999

PBANKA_103960

0.999

Your Current Organism:

Plasmodium berghei

NCBI taxonomy Id: 5821
Other names: P. berghei, Plasmodium berghei

Export your current network:

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... as simple tabular text output:

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
PBANKA_030360	PBANKA_041030	proteasome 26S regulatory subunit	26S proteasome regulatory subunit S14	0.999
PBANKA_030360	PBANKA_050220	proteasome 26S regulatory subunit	26s proteasome subunit p55	0.999
PBANKA_030360	PBANKA_051450	proteasome 26S regulatory subunit	hypothetical protein	0.999
PBANKA_030360	PBANKA_081390	proteasome 26S regulatory subunit	26S proteasome regulatory subunit	0.999
PBANKA_030360	PBANKA_091900	proteasome 26S regulatory subunit	26S proteasome regulatory complex subunit	0.999
PBANKA_030360	PBANKA_103960	proteasome 26S regulatory subunit	proteosome subunit	0.999
PBANKA_030360	PBANKA_120660	proteasome 26S regulatory subunit	hypothetical protein	0.999
PBANKA_030360	PBANKA_122290	proteasome 26S regulatory subunit	hypothetical protein	0.999
PBANKA_030360	PBANKA_132970	proteasome 26S regulatory subunit	26S proteasome subunit	0.999
PBANKA_030360	PBANKA_135180	proteasome 26S regulatory subunit	Proteasome regulatory component, putative	0.999
PBANKA_041030	PBANKA_030360	26S proteasome regulatory subunit S14	proteasome 26S regulatory subunit	0.999
PBANKA_041030	PBANKA_050220	26S proteasome regulatory subunit S14	26s proteasome subunit p55	0.999
PBANKA_041030	PBANKA_051450	26S proteasome regulatory subunit S14	hypothetical protein	0.999
PBANKA_041030	PBANKA_081390	26S proteasome regulatory subunit S14	26S proteasome regulatory subunit	0.999
PBANKA_041030	PBANKA_091900	26S proteasome regulatory subunit S14	26S proteasome regulatory complex subunit	0.999
PBANKA_041030	PBANKA_103960	26S proteasome regulatory subunit S14	proteosome subunit	0.999
PBANKA_041030	PBANKA_120660	26S proteasome regulatory subunit S14	hypothetical protein	0.999
PBANKA_041030	PBANKA_122290	26S proteasome regulatory subunit S14	hypothetical protein	0.999
PBANKA_041030	PBANKA_132970	26S proteasome regulatory subunit S14	26S proteasome subunit	0.999
PBANKA_041030	PBANKA_135180	26S proteasome regulatory subunit S14	Proteasome regulatory component, putative	0.999

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Experiments

Cooccurrence

Databases

Neighborhood

Textmining

Fusion

Coexpression