Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
|
Your Input:
|
Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
|||||
 | PBANKA_121780 | hypothetical protein (183 aa) | ||||||||||||
Predicted Functional Partners:
| ||||||||||||||
 | PBANKA_011130 | hypothetical protein (117 aa) |
 |
|
0.792 | |||||||||
 | PBANKA_144460 | hypothetical protein (661 aa) |
|
0.786 | ||||||||||
 | PBANKA_100910 | hypothetical protein (818 aa) |
|
0.762 | ||||||||||
 | PBANKA_134500 | hypothetical protein (206 aa) |
|
0.629 | ||||||||||
 | PBANKA_124310 | F-actin capping protein alpha subunit (307 aa) |
|
0.629 | ||||||||||
 | PBANKA_010470 | hypothetical protein (288 aa) |
|
0.629 | ||||||||||
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5821
Other names: P. berghei, Plasmodium berghei
Other names: P. berghei, Plasmodium berghei
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