Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
|
Your Input:
|
Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | PBANKA_123150 | hypothetical protein (1218 aa) | ||||||||||||
Predicted Functional Partners:
| ||||||||||||||
 | PBANKA_021060 | hypothetical protein (2788 aa) |
 |
|
0.792 | |||||||||
 | PBANKA_071590 | Ubiquitin carboxyl-terminal hydrolase a, putative (863 aa) |
|
|
0.758 | |||||||||
 | PBANKA_132410 | hypothetical protein (228 aa) |
|
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0.726 | |||||||||
 | PBANKA_100110 | ubiquitin-specific protease (386 aa) |
|
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0.715 | |||||||||
 | PBANKA_124200 | Ubiquitin carboxyl-terminal hydrolase (545 aa) |
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0.703 | ||||||||||
 | PBANKA_141140 | ubiquitin-like protein (78 aa) |
|
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0.667 | |||||||||
 | PBANKA_102800 | hypothetical protein (1226 aa) |
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0.637 | ||||||||||
 | PBANKA_020880 | hypothetical protein (2945 aa) |
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0.637 | ||||||||||
 | PBANKA_010250 | phenylalanine--tRNA ligase (477 aa) |
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0.433 | ||||||||||
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5821
Other names: P. berghei, Plasmodium berghei
Other names: P. berghei, Plasmodium berghei
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