Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Your Input:
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Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | PBANKA_131370 | Protein kinase, putative (375 aa) | ||||||||||||
Predicted Functional Partners:
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 | PBANKA_093370 | Mitogen-activated protein kinase 2, putative (523 aa) |
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0.843 | |||||||
 | PBANKA_123020 | cdc2-like protein kinase (712 aa) |
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0.802 | |||||||||
 | PBANKA_131540 | protein phosphatase 2b regulatory subunit (177 aa) |
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0.744 | |||||||||
 | calmodulin | K02183 calmodulin (149 aa) |
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0.736 | ||||||||
 | PBANKA_061580 | hypothetical protein (2456 aa) |
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0.621 | ||||||||||
 | PBANKA_141450 | Protein kinase, putative (314 aa) |
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0.618 | |||||
 | PBANKA_134410 | myosin (1965 aa) |
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0.612 | ||||||||||
 | PBANKA_101330 | Mitogen-activated protein kinase 1, putative (599 aa) |
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0.565 | ||||||
 | PBANKA_070970 | Protein kinase, putative (806 aa) |
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0.547 | |||||||||
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5821
Other names: P. berghei, Plasmodium berghei
Other names: P. berghei, Plasmodium berghei
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