PBANKA_142720 protein (Plasmodium berghei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Size

small nodes:
protein of unknown 3D structure

large nodes:
some 3D structure is known or predicted

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Score

PBANKA_142720

Putative uncharacterized protein (514 aa)

Predicted Functional Partners:

PBANKA_131870

0.822

PBANKA_141450

0.804

PBANKA_101330

0.804

PBANKA_093370

0.804

PBANKA_091340

0.794

PBANKA_122880

0.781

PBANKA_082690

0.781

PBANKA_030850

0.781

PBANKA_092700

0.772

PBANKA_130520

0.770

Your Current Organism:

Plasmodium berghei

NCBI taxonomy Id: 5821
Other names: P. berghei, Plasmodium berghei

Export your current network:

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
PBANKA_030850	PBANKA_091340	Protein kinase, putative	Putative uncharacterized protein	0.763
PBANKA_030850	PBANKA_131870	Protein kinase, putative	Protein phosphatase 2C, putative	0.763
PBANKA_030850	PBANKA_141450	Protein kinase, putative	Protein kinase, putative	0.449
PBANKA_030850	PBANKA_142720	Protein kinase, putative	Putative uncharacterized protein	0.781
PBANKA_082690	PBANKA_091340	hypothetical protein	Putative uncharacterized protein	0.763
PBANKA_082690	PBANKA_131870	hypothetical protein	Protein phosphatase 2C, putative	0.763
PBANKA_082690	PBANKA_142720	hypothetical protein	Putative uncharacterized protein	0.781
PBANKA_091340	PBANKA_030850	Putative uncharacterized protein	Protein kinase, putative	0.763
PBANKA_091340	PBANKA_082690	Putative uncharacterized protein	hypothetical protein	0.763
PBANKA_091340	PBANKA_092700	Putative uncharacterized protein	hypothetical protein	0.763
PBANKA_091340	PBANKA_093370	Putative uncharacterized protein	Mitogen-activated protein kinase 2, putative	0.453
PBANKA_091340	PBANKA_101330	Putative uncharacterized protein	Mitogen-activated protein kinase 1, putative	0.453
PBANKA_091340	PBANKA_122880	Putative uncharacterized protein	protein kinase	0.763
PBANKA_091340	PBANKA_130520	Putative uncharacterized protein	protein kinase	0.770
PBANKA_091340	PBANKA_131870	Putative uncharacterized protein	Protein phosphatase 2C, putative	0.767
PBANKA_091340	PBANKA_141450	Putative uncharacterized protein	Protein kinase, putative	0.453
PBANKA_091340	PBANKA_142720	Putative uncharacterized protein	Putative uncharacterized protein	0.794
PBANKA_092700	PBANKA_091340	hypothetical protein	Putative uncharacterized protein	0.763
PBANKA_092700	PBANKA_093370	hypothetical protein	Mitogen-activated protein kinase 2, putative	0.449
PBANKA_092700	PBANKA_131870	hypothetical protein	Protein phosphatase 2C, putative	0.763

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Experiments

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Textmining

Fusion

Coexpression

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