ubp-2 protein (Plasmodium chabaudi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Size

small nodes:
protein of unknown 3D structure

large nodes:
some 3D structure is known or predicted

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

ubp-2

Ubiquitin carboxyl-terminal hydrolase (2722 aa)

Predicted Functional Partners:

PCHAS_121170

0.999

PCHAS_061200

0.892

PCHAS_114120

0.885

PCHAS_100200

0.847

PCHAS_041770

0.847

PCHAS_091340

0.806

PCHAS_123210

0.805

PCHAS_072500

0.784

PCHAS_132740

0.768

PCHAS_124240

0.751

Your Current Organism:

Plasmodium chabaudi

NCBI taxonomy Id: 5825
Other names: P. chabaudi, Plasmodium chabaudi

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TSV: tab separated values - can be opened in Excel

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PCHAS_041770	PCHAS_061200	PCHAS_041770	PCHAS_061200	hypothetical protein	annotation not available	0.838
PCHAS_041770	PCHAS_072500	PCHAS_041770	PCHAS_072500	hypothetical protein	ubiquitin carboxyl-terminal hydrolase a	0.956
PCHAS_041770	PCHAS_114120	PCHAS_041770	PCHAS_114120	hypothetical protein	hypothetical protein	0.580
PCHAS_041770	PCHAS_124240	PCHAS_041770	PCHAS_124240	hypothetical protein	hypothetical protein	0.736
PCHAS_041770	PCHAS_132740	PCHAS_041770	PCHAS_132740	hypothetical protein	annotation not available	0.833
PCHAS_041770	ubp-2	PCHAS_041770	PCHAS_020900	hypothetical protein	Ubiquitin carboxyl-terminal hydrolase	0.847
PCHAS_061200	PCHAS_041770	PCHAS_061200	PCHAS_041770	annotation not available	hypothetical protein	0.838
PCHAS_061200	PCHAS_072500	PCHAS_061200	PCHAS_072500	annotation not available	ubiquitin carboxyl-terminal hydrolase a	0.971
PCHAS_061200	PCHAS_091340	PCHAS_061200	PCHAS_091340	annotation not available	hypothetical protein	0.479
PCHAS_061200	PCHAS_100200	PCHAS_061200	PCHAS_100200	annotation not available	ubiquitin-specific protease	0.838
PCHAS_061200	PCHAS_114120	PCHAS_061200	PCHAS_114120	annotation not available	hypothetical protein	0.831
PCHAS_061200	PCHAS_121170	PCHAS_061200	PCHAS_121170	annotation not available	GMP synthetase	0.884
PCHAS_061200	PCHAS_124240	PCHAS_061200	PCHAS_124240	annotation not available	hypothetical protein	0.996
PCHAS_061200	PCHAS_132740	PCHAS_061200	PCHAS_132740	annotation not available	annotation not available	0.928
PCHAS_061200	ubp-2	PCHAS_061200	PCHAS_020900	annotation not available	Ubiquitin carboxyl-terminal hydrolase	0.892
PCHAS_072500	PCHAS_041770	PCHAS_072500	PCHAS_041770	ubiquitin carboxyl-terminal hydrolase a	hypothetical protein	0.956
PCHAS_072500	PCHAS_061200	PCHAS_072500	PCHAS_061200	ubiquitin carboxyl-terminal hydrolase a	annotation not available	0.971
PCHAS_072500	PCHAS_100200	PCHAS_072500	PCHAS_100200	ubiquitin carboxyl-terminal hydrolase a	ubiquitin-specific protease	0.956
PCHAS_072500	PCHAS_114120	PCHAS_072500	PCHAS_114120	ubiquitin carboxyl-terminal hydrolase a	hypothetical protein	0.795
PCHAS_072500	PCHAS_123210	PCHAS_072500	PCHAS_123210	ubiquitin carboxyl-terminal hydrolase a	hypothetical protein	0.775

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Experiments

Cooccurrence

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Fusion

Coexpression