Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
|
Your Input:
|
Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
|||||
 | PCHAS_041790 | signal peptidase (185 aa) | ||||||||||||
Predicted Functional Partners:
| ||||||||||||||
 | PCHAS_135080 | signal peptidase (184 aa) |
 |
|
|
|
0.999 | |||||||
 | PCHAS_100250 | Putative uncharacterized protein (1132 aa) |
|
0.900 | ||||||||||
 | PCHAS_142050 | Ubiquitin-conjugating enzyme, putative (330 aa) |
|
|
|
|
0.797 | |||||||
 | PCHAS_114120 | hypothetical protein (128 aa) |
|
|
|
0.768 | ||||||||
 | PCHAS_082080 | hypothetical protein (518 aa) |
|
|
|
0.743 | ||||||||
 | PCHAS_030910 | Sec61-gamma subunit of protein translocation complex (83 aa) |
|
|
|
0.719 | ||||||||
 | PCHAS_103470 | 40S ribosomal protein S8 (227 aa) |
|
|
|
0.705 | ||||||||
 | PCHAS_136880 | Ribosomal protein L17, putative (198 aa) |
|
|
0.704 | |||||||||
 | PCHAS_090280 | ribosomal protein S4 (261 aa) |
|
|
0.697 | |||||||||
 | PCHAS_080790 | 40S ribosomal protein S11, putative (161 aa) |
|
|
0.690 | |||||||||
Your Current Organism:
Plasmodium chabaudi
NCBI taxonomy Id: 5825
Other names: P. chabaudi, Plasmodium chabaudi
Other names: P. chabaudi, Plasmodium chabaudi
Share
