Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Your Input:
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Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | PCHAS_091790 | protein kinase (528 aa) | ||||||||||||
Predicted Functional Partners:
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 | PCHAS_100470 | Vacuolar ATP synthase subunit b, putative (494 aa) |
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0.895 | |||||||||
 | PCHAS_123090 | hypothetical protein (727 aa) |
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0.884 | |||||||
 | PCHAS_131010 | hypothetical protein (1271 aa) |
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0.875 | ||||||||
 | PCHAS_144340 | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (By similarity) (264 aa) |
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0.855 | ||||||||||
 | PCHAS_113740 | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (By similarity) (274 aa) |
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0.855 | ||||||||||
 | PCHAS_130840 | hypothetical protein (2101 aa) |
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0.737 | |||||||||
 | PCHAS_144000 | hypothetical protein (407 aa) |
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0.689 | ||||||||
 | PCHAS_102610 | hypothetical protein (3139 aa) |
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0.689 | ||||||||
 | PCHAS_041030 | protein kinase (2456 aa) |
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0.655 | ||||||||||
 | PCHAS_060950 | hypothetical protein (1388 aa) |
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0.633 | ||||||||
Your Current Organism:
Plasmodium chabaudi
NCBI taxonomy Id: 5825
Other names: P. chabaudi, Plasmodium chabaudi
Other names: P. chabaudi, Plasmodium chabaudi
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