Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Your Input:
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Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | PCHAS_092260 | hypothetical protein (594 aa) | ||||||||||||
Predicted Functional Partners:
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 | PCHAS_146150 | delta-aminolevulinic acid synthetase (627 aa) |
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0.905 | |||||||
 | PCHAS_102780 | Putative uncharacterized protein (569 aa) |
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0.905 | |||||||
 | PCHAS_111820 | Bi-functional enzyme- long-chain fatty-acid Co-A ligase and oxalyl Co-A decarboxylase, putative (1344 aa) |
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0.687 | ||||||||
 | PCHAS_123050 | enoyl-acyl carrier reductase (392 aa) |
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0.677 | ||||||||
 | PCHAS_061960 | Ferrodoxin reductase-like protein, putative (655 aa) |
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0.636 | |||||||||
 | PCHAS_145560 | hypothetical protein (735 aa) |
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0.632 | ||||||||
 | PCHAS_140170 | hypothetical protein (740 aa) |
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0.632 | ||||||||
 | PCHAS_124030 | long-chain fatty acid CoA ligase (684 aa) |
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0.632 | ||||||||
 | PCHAS_100070 | acyl-CoA synthetase (753 aa) |
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0.632 | ||||||||
 | PCHAS_031390 | hypothetical protein (753 aa) |
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0.632 | ||||||||
Your Current Organism:
Plasmodium chabaudi
NCBI taxonomy Id: 5825
Other names: P. chabaudi, Plasmodium chabaudi
Other names: P. chabaudi, Plasmodium chabaudi
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