Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Your Input:
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Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | AMA-1 | Apical membrane antigen 1; Involved in parasite invasion of erythrocytes (558 aa) | ||||||||||||
Predicted Functional Partners:
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 | PCHAS_131900 | hypothetical protein (1990 aa) |
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0.988 | ||||||||
 | PCHAS_072220 | hypothetical protein (1149 aa) |
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0.961 | |||||||||
 | PCHAS_051290 | hypothetical protein (748 aa) |
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0.442 | |||||||||
 | PCHAS_070980 | hypothetical protein (1629 aa) |
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0.412 | ||||||||||
Your Current Organism:
Plasmodium chabaudi
NCBI taxonomy Id: 5825
Other names: P. chabaudi, Plasmodium chabaudi
Other names: P. chabaudi, Plasmodium chabaudi
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