Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Size
small nodes:
protein of unknown 3D structure
protein of unknown 3D structure
large nodes:
some 3D structure is known or predicted
some 3D structure is known or predicted
Node Color
colored nodes:
query proteins and first shell of interactors
query proteins and first shell of interactors
white nodes:
second shell of interactors
second shell of interactors
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Your Input:
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Neighborhood |
Gene Fusion |
Cooccurence |
Coexpression |
Experiments |
Databases |
Textmining |
[Homology] |
Score |
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 | PCHAS_101410 | Mitogen-activated protein kinase 1, putative (599 aa) | ||||||||||||
Predicted Functional Partners:
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 | PCHAS_132210 | hypothetical protein (171 aa) |
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0.932 | |||||||||
 | PCHAS_040810 | hypothetical protein (421 aa) |
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0.932 | |||||||||
 | PCHAS_050170 | hypothetical protein (439 aa) |
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0.916 | |||||||||
 | PCHAS_113620 | guanylyl cyclase (2818 aa) |
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0.888 | |||||||||
 | PCHAS_071160 | guanylyl cyclase (3834 aa) |
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0.888 | |||||||||
 | PCHAS_051760 | hypothetical protein (494 aa) |
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0.870 | |||||||||
 | PCHAS_142000 | annotation not available (824 aa) |
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0.866 | |||||||||
 | PCHAS_121780 | protein kinase (283 aa) |
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0.862 | |||||||
 | PCHAS_090230 | protein kinase (1176 aa) |
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0.862 | |||||||
 | PCHAS_080250 | hypothetical protein (1298 aa) |
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0.862 | |||||||
Your Current Organism:
Plasmodium chabaudi
NCBI taxonomy Id: 5825
Other names: P. chabaudi, Plasmodium chabaudi
Other names: P. chabaudi, Plasmodium chabaudi
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